LOCUS AK101535 2002 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033048C18, full insert
sequence.
ACCESSION AK101535
VERSION AK101535.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2002)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2002
/clone="J033048C18"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 545..1723
/db_xref="Osa1:LOC_Os09g25620"
/note="(Rice Genome Annotation Project)
S-adenosylmethionine decarboxylase proenzyme, putative,
expressed"
/note="mapping to R09-TIGRv4S1-000409R (Chr.9: short
arm=15384740, long arm=15388095, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95110.1"
/translation="MSMSLADSWGSAPASPIGFEGYEKRLEITLSDAPVFVDPCGRGL
RALSREQIDSFLDLAKCTIVSHLSNKHFDSYVLSESSLFVYPHKVVLKTCGTTKLLLS
IPRILELAAELSLPVLSVKYSRGMFIFPGAQPSPHRSFLEEVSVLNSFFGGLKSGGNA
YVIGDAFKPKKKWHVYYATEEPEQPMVTLEMCMTGLDAKKAEVFFKDSTDGSCSSAKE
MTMFSGISEIIPEMEICDFEFDPCGYSMNGIYGPAVSTIHVTPEEGFSYASYEAMNFN
PSSLVYDDLIKKVLACFCPSDFSVAVTIFGGHGFAKSWAKGAEVDSYMCDDLVEQELP
GGGVLMYQSFTAVTPGAVSPRSTLDGWNSDGAEMVAKSKEMSVCWEGEKAAKKKDADA
"
BASE COUNT 423 a 493 c 487 g 599 t
ORIGIN
1 gcacgcctcg gcaatccaaa gccctcctcg tcctcgcaga gcatccattg cctcgatttt
61 ctattccaaa ttcccccacg cgaagaacag ccagcgccct cctcctcctc ctccttcgcc
121 ttcctcctgg tttcttgcca tctttccagg gaaggaggaa ccgcggcccg gccgcattct
181 tggacaagaa ttgttggcat aaaggaacat tttgttgatg ttctaatgga gtcaaaaggt
241 ggcaaaaaga agtctagcag tagtagttcc atgtacgaag ctcccctagg ctacaagatt
301 gaggacgttc gcccagccgg aggaatcaag aagttccagt ctgctgctta ctccaactgc
361 gctcgcaagc catcctgata ttccttcaca tgcctttccc cgtagagtag gaatttcctg
421 caatttttcc tttgttttgt tgcaataaat ctcccttggc tggctgcttt ctcaatctct
481 tcccttgtct tctccgatct cttctttcct gtcttgtcca ctgctccttg caacacttga
541 tcaaatgtcg atgtccttgg ctgattcttg gggctctgcc cctgcctcgc ccattgggtt
601 tgaaggctat gagaagcgcc ttgagataac attgtctgat gcgcccgtct ttgtggaccc
661 ctgtggtcgc ggccttcgtg ccctctcacg tgagcagatc gactcgttct tggatcttgc
721 aaagtgtacc attgtatccc atctttcgaa caagcacttc gactcatatg tgctttcaga
781 gtcgagcctt tttgtttatc cccacaaggt tgttctgaag acctgtggta caacaaagct
841 tctgctctcc attcctcgca tccttgagct tgctgcagag ttgtcactgc ctgttctatc
901 agtgaagtac tctcgtggga tgttcatctt ccctggagcg cagccatcac cgcatcgcag
961 cttcttggag gaggtttctg tgctcaacag cttctttggt ggcctcaagt caggtggcaa
1021 tgcttatgtc attggtgatg cattcaagcc caagaagaag tggcatgtct actatgccac
1081 agaagagcct gagcagccca tggttacact cgagatgtgc atgactgggc tggatgctaa
1141 gaaagctgag gtgttcttca aggattccac tgatggctcc tgctcatcag ctaaggagat
1201 gactatgttc tctgggattt ctgaaatcat ccctgagatg gagatttgtg actttgagtt
1261 tgacccgtgt gggtactcaa tgaatggcat ttatggtccc gccgtctcca cgatccatgt
1321 cactcctgag gaaggtttca gctatgcaag ctatgaagca atgaacttca atcctagctc
1381 cttggtctac gatgatttga tcaagaaggt cctggcttgt ttctgccctt cagacttttc
1441 ggtcgctgtt accatcttcg gtgggcatgg ttttgccaaa tcatgggcaa aaggtgcaga
1501 ggttgattcc tacatgtgcg atgatcttgt tgagcaagag cttcctggtg gcggtgtgct
1561 gatgtatcag agttttactg ctgttactcc tggtgctgtg tcaccgaggt cgaccttgga
1621 tggctggaac agcgatggag cagagatggt tgcgaagagc aaagagatga gtgtctgctg
1681 ggaaggagag aaggcggcga agaagaaaga tgcagatgcc tgagaaatcg gcagttcttc
1741 aacctcaagt tgcaagtttg attcatctga agtttctgag acgccttatt tggttctgct
1801 cttgcagttt cggttaagca gctggctggg ctaccggcaa agcatatgtt acttgttcat
1861 tgttctttta tatctgtctg cccaaataag tgctctagat ggtttgctgc gtctgccata
1921 gtgagcaatt cagattgtag tagaattctt atctgttgcc gatgctcttt aagggagaat
1981 gatatgtaac tcgattattt tc
//