LOCUS       AK100842                1386 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J023123F22, full insert
            sequence.
ACCESSION   AK100842
VERSION     AK100842.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1386)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1386
                     /clone="J023123F22"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             430..1023
                     /db_xref="Osa1:LOC_Os02g02840"
                     /db_xref="RAP-DB:Os02g0120800"
                     /note="(RAP Annotation release2) Similar to Small
                     GTP-binding protein (Fragment)"
                     /note="(Rice Genome Annotation Project) rac-like
                     GTP-binding protein 6, putative, expressed"
                     /note="mapping to R02-TIGRv4S1-000070R (Chr.2: short
                     arm=1080559, long arm=1084282, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG94793.1"
                     /translation="MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS
                     ANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIP
                     ELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSS
                     KTQLNVKGVFDAAIKVVLQPPKAKKKKKAQRGACSIL"
BASE COUNT          308 a          375 c          342 g          361 t
ORIGIN      
        1 gtgccacctc ctccacccac ctcacccacc acctctctct ctactcctcc tcttctcctc
       61 ctccgtctcg agcgagctct ctccttcctt gtctcgggtc tcggcattgc atttgcattg
      121 gggggcattg ctattgcttc gcttgcgctt ggccacccac catttcggcg cggagaggag
      181 accgcttcac ccgccgatct gcgagaaacc ctctccgcct cgcctcctcc acctcccaat
      241 cttaacccaa cctcccccct tcctctcgcg tcgacccctt gctttgctcc tccttcaacc
      301 ttcttctttc ttggagtttc ttgagagaga gagagagaga gagagagaga gagagagaga
      361 gagagggggg agcggtcgca ggaggaggag gacggcggcg tctgctgcga ccgacgggga
      421 gcggcgagga tgagcgcgtc caggttcata aagtgcgtca ccgtcgggga cggcgccgtc
      481 ggcaagacct gcatgctcat ctcctacacc tccaacacct tccccactga ttatgttccg
      541 acggtgtttg acaacttcag tgccaacgtc gtggttgatg gtaacaccgt caacctcggg
      601 ctatgggaca ctgcaggtca ggaggattac aacagactga gaccactgag ttatcgtgga
      661 gctgatgttt tccttctggc cttctcgcta atcagcaagg ccagctatga gaatgtttca
      721 aagaagtgga tacctgagct gaagcattat gcacctggtg tgcctatcat ccttgtggga
      781 acaaagcttg atcttcgaga tgacaagcag ttttttgtgg accatcctgg tgctgttcct
      841 atcaccactg ctcagggaga ggaactaaga aagcaaatag gcgccccata ctacatcgaa
      901 tgcagctcaa agacccaact aaacgtcaag ggcgttttcg atgcggcaat aaaggtggtg
      961 ctgcagccac ccaaggcgaa gaagaagaaa aaggcgcaaa ggggggcgtg ctccattttg
     1021 tgatctaatc atcagtagac gacgaagaag aagaacgatg aagttgccag gctttattat
     1081 tgttgcgtct tgcttcagcg aaacagcatt catggtccgg ggatcctagt ttactggcag
     1141 ctgcagcaag gcctctttgt cgaggcaatg agcgatccgt ttgtttcatt ttctcctttc
     1201 tgccttgtga ttatctcgtg tgactgacaa gtcgtggcaa ttaggtaact ttcctagatg
     1261 gtatttcctg tgtttgagga aaaaaattct tgttatccct gtttcataag tagacatgat
     1321 gtaatcgcac tcagtttatt cttttccttc ttatttcact tcaatggaaa attatgtttc
     1381 cccttc
//