LOCUS AK100842 1386 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023123F22, full insert sequence. ACCESSION AK100842 VERSION AK100842.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1386) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1386 /clone="J023123F22" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 430..1023 /db_xref="Osa1:LOC_Os02g02840" /db_xref="RAP-DB:Os02g0120800" /note="(RAP Annotation release2) Similar to Small GTP-binding protein (Fragment)" /note="(Rice Genome Annotation Project) rac-like GTP-binding protein 6, putative, expressed" /note="mapping to R02-TIGRv4S1-000070R (Chr.2: short arm=1080559, long arm=1084282, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG94793.1" /translation="MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS ANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIP ELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSS KTQLNVKGVFDAAIKVVLQPPKAKKKKKAQRGACSIL" BASE COUNT 308 a 375 c 342 g 361 t ORIGIN 1 gtgccacctc ctccacccac ctcacccacc acctctctct ctactcctcc tcttctcctc 61 ctccgtctcg agcgagctct ctccttcctt gtctcgggtc tcggcattgc atttgcattg 121 gggggcattg ctattgcttc gcttgcgctt ggccacccac catttcggcg cggagaggag 181 accgcttcac ccgccgatct gcgagaaacc ctctccgcct cgcctcctcc acctcccaat 241 cttaacccaa cctcccccct tcctctcgcg tcgacccctt gctttgctcc tccttcaacc 301 ttcttctttc ttggagtttc ttgagagaga gagagagaga gagagagaga gagagagaga 361 gagagggggg agcggtcgca ggaggaggag gacggcggcg tctgctgcga ccgacgggga 421 gcggcgagga tgagcgcgtc caggttcata aagtgcgtca ccgtcgggga cggcgccgtc 481 ggcaagacct gcatgctcat ctcctacacc tccaacacct tccccactga ttatgttccg 541 acggtgtttg acaacttcag tgccaacgtc gtggttgatg gtaacaccgt caacctcggg 601 ctatgggaca ctgcaggtca ggaggattac aacagactga gaccactgag ttatcgtgga 661 gctgatgttt tccttctggc cttctcgcta atcagcaagg ccagctatga gaatgtttca 721 aagaagtgga tacctgagct gaagcattat gcacctggtg tgcctatcat ccttgtggga 781 acaaagcttg atcttcgaga tgacaagcag ttttttgtgg accatcctgg tgctgttcct 841 atcaccactg ctcagggaga ggaactaaga aagcaaatag gcgccccata ctacatcgaa 901 tgcagctcaa agacccaact aaacgtcaag ggcgttttcg atgcggcaat aaaggtggtg 961 ctgcagccac ccaaggcgaa gaagaagaaa aaggcgcaaa ggggggcgtg ctccattttg 1021 tgatctaatc atcagtagac gacgaagaag aagaacgatg aagttgccag gctttattat 1081 tgttgcgtct tgcttcagcg aaacagcatt catggtccgg ggatcctagt ttactggcag 1141 ctgcagcaag gcctctttgt cgaggcaatg agcgatccgt ttgtttcatt ttctcctttc 1201 tgccttgtga ttatctcgtg tgactgacaa gtcgtggcaa ttaggtaact ttcctagatg 1261 gtatttcctg tgtttgagga aaaaaattct tgttatccct gtttcataag tagacatgat 1321 gtaatcgcac tcagtttatt cttttccttc ttatttcact tcaatggaaa attatgtttc 1381 cccttc //