LOCUS AK100463 1723 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023092A20, full insert sequence. ACCESSION AK100463 VERSION AK100463.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1723) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1723 /clone="J023092A20" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 256..1542 /db_xref="Osa1:LOC_Os01g11880" /db_xref="RAP-DB:Os01g0217800" /note="(RAP Annotation release2) DJ-1 family protein" /note="(Rice Genome Annotation Project) 4-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed" /note="mapping to R01-TIGRv4S1-000342F (Chr.1: short arm=6429137, long arm=6432453, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG94619.1" /translation="MAMAAASASAMARRAASWPRLLLLSRAFAAAAAEPKRVLVPVAD GTEPVEAAATADVLNRAGARVTVATADPAGDDRGLLVEAAFGVKLVADGRVADLEGEA FDLIALPGGMPGSANLRDCKVLEKMVKKQAEQGGLYAAICATPAVTLAHWGLLKGLKA TCYPSFMEKFTAEIIPVNSRVVVDRNAVTSQGPATAIEYALALVEQLYGKEKSEEVAG PLYVRPQPGVDYVIDEFNSVEWKCSGTPQVLVPVANGSEEMEALNLIDILRRAGANVT VASVEDKLQVVTRRHKFNLIADIMVEEAAKREFDLIVMPGGLPGAQKLSSTKVLVDLL KKQAESNKPYGAICASPAYVLEPHGLLKGKKATSFPPMAHLLTDQSACDSRVVVDGNL ITSKAPGSATEFALAIVEKLFGREKAVSIAKELIFM" BASE COUNT 395 a 456 c 495 g 377 t ORIGIN 1 gagtagtaca gcgcacaggc cacgcgtgcg cgtccaccga aacagcggcg gcgacgacga 61 ggcgatcgat tcctggacac tcgcgccacg ccaccccact gtccctgcac gctgcagcta 121 cccctactct accactgccc tctccggcag ggaagcgagg aagaggcacg caccacgaag 181 tcgccacctc gatttttccg gcgaacgacg caagaataac accccccccc ccttacctac 241 ggggatagtg atacgatggc gatggcggcc gcttccgcct ccgccatggc gaggcgggcc 301 gcttcgtggc cacggctcct cctcctctcc cgcgccttcg ccgccgccgc cgctgagccg 361 aagcgggtgc tcgtgccggt cgcggacggc acggagccgg tggaggcggc cgccaccgcc 421 gacgtgctca accgcgccgg cgcgcgggtc accgtcgcca cggctgaccc cgcgggcgac 481 gaccgtggcc tcctggtgga ggccgcgttc ggggtcaagc tcgtcgccga cggccgcgtc 541 gccgacctgg aaggcgaggc ctttgacctc atcgccctac ccggaggaat gccgggatca 601 gctaacctca gagattgcaa ggtgctggag aagatggtca agaagcaggc agagcagggt 661 ggcctctacg ccgccatctg cgccacgccg gcggtgacgc tggctcactg gggcttgctc 721 aaaggcttaa aggcgacttg ctatccatca ttcatggaga agttcaccgc tgaaattatc 781 cctgtgaact ctagggtggt ggtagataga aatgcagtga ccagccaagg gccagcaaca 841 gcaattgaat atgctctcgc tttggtggag caactgtacg gcaaagagaa gtcggaggag 901 gttgcaggac ccttgtatgt tcgtcctcaa cctggggttg actatgtcat agatgagttc 961 aattcagttg agtggaaatg cagtggtaca cctcaggttc ttgtgccagt tgctaatggt 1021 tcggaggaaa tggaagctct taatttaata gatatcttgc gtagagcagg agcaaatgtt 1081 accgttgcat cagttgagga taagttgcaa gttgtgaccc gccgccacaa atttaacctg 1141 atagctgata ttatggtgga agaagctgcc aaaagggaat tcgatctgat tgtcatgccg 1201 ggtggtctgc caggtgctca aaagctttct agtacaaagg tacttgtaga tttactaaag 1261 aaacaggcag aatctaataa accatatggt gcaatatgcg cttctcctgc ttatgttctc 1321 gagccccatg gtttactgaa ggggaagaag gcaacatcat ttccaccaat ggcacacctg 1381 cttactgatc agagtgcatg tgacagtagg gtggttgttg atggtaacct tatcactagc 1441 aaagccccag gctccgcgac agagttcgcg ctagccattg ttgagaagct gtttggtcga 1501 gagaaagcgg tcagtatagc gaaggagttg atttttatgt gattatacac ttgggcattt 1561 atgcatcagg tgcctgtcac ctgtgagtga tgcttctgtg aataactact tatgctgctt 1621 tcctaggaat gcataatata agcctatagc agcatgtggc aatccatgtg aatgaggaat 1681 aaatgtacat tatgagtatc atgtgtaaag agtcgtcgtt gtt //