LOCUS AK099993 2702 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013132D09, full insert
sequence.
ACCESSION AK099993
VERSION AK099993.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2702)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2702
/clone="J013132D09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2702
/db_xref="Osa1:LOC_Os06g33570"
/db_xref="RAP-DB:Os06g0527100"
/note="(RAP Annotation release2) Similar to Cyclic
nucleotide-gated channel A (Fragment)"
/note="(Rice Genome Annotation Project) cyclic
nucleotide-gated ion channel 1, putative, expressed"
/note="mapping to R06-TIGRv4S1-000650F (Chr.6: short
arm=19543602, long arm=19552008, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 725 a 581 c 619 g 777 t
ORIGIN
1 gacccgtttt cgtcctccgc tttccatcgc tccctccacc tccaccgcac taccaccacc
61 accaccacca accgccgtgc ggacgccgcc ggcttcccgg ccgcgacgcg gaggaggacc
121 gaattccccc ccacccctcc gtccaatccg cgcgcaccac ctccgaggga actccatgta
181 tgcaaatgtc gccacccttg tagaatcaat aaagctgttc tagcagctaa cctttggttt
241 ggtggatttt tggaaaatga tgatgggaag agaggacaaa tatgtgagat ttgaggactg
301 gagatctgag cagtcagtta tgtcaccacg gaggcataat gctttaagtt cacttaaaga
361 aagaactgct ggagtttttg cattcctaga aaaccttgtg cattctgaaa ccttaaagag
421 attggtgctg catgaaagga agttgacaac tagaactctt catcctcagg gaccatttct
481 gcaaagctgg aacaagatat ttgttttgtc atgtatcttt gcagtttctg tggacccatt
541 gttcttctat attccggtta tcaatgacaa caacacatgc tggtatttgg ataaaaagtt
601 ggaaatcaca gcaagtgtcc tgcgcttttt cacagatatc ttctatatac tccatatcat
661 atttcagttc aggacaggtt atattgcgtc ttctcttaca acttttggtc ggggtgtctt
721 ggttgaggat agatatgcaa tagcaaagcg atacttgtca acatattttc tgatcgatgt
781 ctttgctgtt ctacccctcc ctcaggtggt tattttggtt gtgctaccta atcttggagg
841 ctcagaggtt acaaaagcca aaaatatctt gatgtttata gttatatgcc aatatgtgcc
901 tcggctgatc cgaataaggc cactgtatct ccaaatcaca aggtctgctg gggtaattac
961 agagacacca tgggctggtg ctgttttgaa ccttttaatt tacttgctcg ccagtcatgt
1021 ccttggagca ctctggtact tgctttccat tgaacgcaaa gatgcctgct ggagagacat
1081 gtgtagtaat aatagtacag tctgtaatca ggcatatttg tactgtgggg ataaggaaaa
1141 ctcgatctta cggactgctt gccttccaat cgactcaaac gatatagatc cgaactttgg
1201 aatttatgtg ccagctctaa ataatgtctc gcaatcaact aattttttgg caaaactatt
1261 ctattgtgtt tggtggggtc tgcaaaatct tagctctctg ggccaaaacc ttaagacaag
1321 cacttatgca tgggagaatc tgtttgcagt ttttgtctca atatcaggct tggttctgtt
1381 tgcactgcta attggtaatg tgcagaccta tttgcagtca gcccatctga gagaagaaga
1441 aatgagagtg aaaagccgtg atacagatca atggatgtca tatcgactgc ttcctgagaa
1501 tctcaaggaa cgaatacgtc gtcatgaaaa atatagatgg caccagacga gcggggttga
1561 tgaagaactc ttgcttatga acctccccaa ggatcttagg agggctataa aacggcatct
1621 ttgcttatca cttcttatga gggttccaat gtttgaaaac atggatgatc aactcttgaa
1681 tgccttgtgc gaccgcctaa agcctgttct ttatacagaa ggtagctgca taattcgtga
1741 agaggatcca gtaaatgaaa tgctgttcat catgagaggt aatctcatga gtatgacaac
1801 gaatggtgga agaactggct tcttcaactc tgatgttttg aaaggtggag atttctgtgg
1861 cgaagagctc ctgacctggg ctcttgaccc cacgtcagtt tccagcctcc ctagctcaac
1921 caggacagtg aagacgatgt ccgaagtcga agcttttgcc ctgagggctg aagacttgaa
1981 gtttgtggcc acccagttcc gacggctaca cagcaaacag ctccagcaca cgtttaagtt
2041 ctactcgcag cattggagaa cctgggcagc ctgtttcata caagcagcct ggcataggta
2101 ctgcagaaag aagatcgaag actctctacg cgagaaggag aagaggttgc agttcgcaat
2161 cgttaatgac ggtgctacaa ctctcagctt cagggcagcg atatatgctt cgcgtttcgc
2221 tggcaacatg atgcggatct tgaggagaaa tgccacccgc aaggctcggt tgaaggaaag
2281 tgtgcctgca aggttgttac aaaaaccagc agaacccaac tttgctgcag aagagcagta
2341 gttctgttta ccacgaatgc gtaaggaatt ttttgtgcat ggcttgtgca ttttttactt
2401 gctgatgttt ttgctttcag ttgacactag acctacaaat taaggagagg aaaaaatcgc
2461 aataggtgtc tgtatctttc tgtaagatct gtatatgtgt tcgtgtatga taataggtga
2521 tacgtgtaat tattattcat caggtgttta tatacaaatt gtgtttatag tagtgtagtg
2581 agcattccat cccgtgttcc catcaggctc ttgaagtcca ggcacggagc aagatcacat
2641 tgtaacggag acacttgttt taactcacat atattgacat gatatagaat taatggattg
2701 tt
//