LOCUS AK099320 1787 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033008O14, full insert
sequence.
ACCESSION AK099320
VERSION AK099320.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1787)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1787
/clone="J033008O14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1787
/db_xref="Osa1:LOC_Os04g53700"
/note="(Rice Genome Annotation Project) MYND finger
family protein, expressed"
/note="mapping to R04-TIGRv4S1-001123R (Chr.4: short
arm=31783678, long arm=31788212, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 475 a 350 c 451 g 511 t
ORIGIN
1 tgaaggtctc gagaacaaaa ccccccaaac cccacggcgg cggcggcgag cggcggcgga
61 agaagcagcc gcaagaggca gcagctcgcg ctggcggcgg catgggtggg agcagcgcaa
121 gcccgtgtga cctggacagg gagttcgcgc cccaaatcgc ccagctcctc gccacccctc
181 ctctccaacc cgcgcaggaa tactacaatg ggctcataca gtccaggaaa catgatggta
241 taagagtgaa cttcagcagc aagcatggga aaggtgtttg tgcgaacaag gagtttgcag
301 aaggggacct tattctgaag gatcaaatat tggttggtgc tcagcacagt cttaacaaga
361 ttgattgcgc tgtgtgcagt tattgctttc gcttcattgg ttctatagag ttccagattg
421 gacgaagatt gtattggcaa agcgttggtt caagcagtga ctgcactaat aggaggcatt
481 gccatgagag tgatttggga tcgagtgcca gttcttctgg tgcaacaaag gaaaacagta
541 gtactttgcc agaagaggtc ttaggatcac ttattactgg tgacatgtca ctgcctttca
601 cagaccattt tagtttgcct caagttgttc cttgtcgtgg atgtgaggaa gaacgctact
661 gcagccaatc atgtgctgat tccgactggg aaacttatca ctctttgctg tgtactggat
721 ctaagactga accatcccag agatctgctc ttcagaaatt catagaacat gcaaatgggt
781 ccaatgatat ttttcttgtt gctgccaagg ctatcacttt cactctgctg aggtacaaga
841 aactcaaaac gcagcctgaa tttcaaaata acacagatga atcaaacttt tctttgctta
901 tggaagcatg gaaaccactt tcgatgggct acaaaaagag gtggtgggac tctgttgctt
961 tgcctgagga tgttgattcc tgtgatgaag atacatttag gcagcaaatt agggatctag
1021 cacttacgtc attgcagctt ctcaaggatg ctatttttga ttctgagtgt gcacccttgt
1081 tctcacttga cgtgtatggc catttaattg gcatgtttga gctgaacaat cttggtttgg
1141 ttgttccgtc tccagtggaa gactatttca tacatattga tgatcttcca gatgatgaga
1201 aggaggaagc tgaaaaggtt acaaggccat ttctagatgc tttaggtgaa gactatgcag
1261 ctccttgtga ggggacggca ttctttcctt tgcaaagctg tatgaatcat tcatgttgtc
1321 caaatgctaa agcatataaa agggatgagg atactgatgg taatgcagtg ataattgctc
1381 tggagcctat caagaaggac gatgagatta ccatatccta catcgatgag gatgtctcct
1441 acgaggagag gcaggcggag cttgcagatt atggattcat ctgtacgtgc cctaggtgcc
1501 aagaagaaaa gcccaactga acaagatcca cagtttggag gttcctgaaa tttatttttt
1561 tggtgtggaa tatgcaattg aagttttgac gactccattt attttatttt ttttgtctag
1621 gatatgcaat tgagattttg acaactccaa aaatgttagg ataggatatg cggaaagaat
1681 gatatgatac gtacttattt gagtggatgc tggattttgc tgtgctaatg ttggatgctg
1741 cagaaagttt ttattccttc tgttcagttg agatttttcc ttttgtg
//