LOCUS AK090167 2939 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 13 days embryo spinal cord cDNA, RIKEN full-length
enriched library, clone:G630009F03 product:hypothetical protein,
full insert sequence.
ACCESSION AK090167
VERSION AK090167.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2939)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=G630009F03
FEATURES Location/Qualifiers
source 1..2939
/clone="G630009F03"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:G630009F03"
/db_xref="MGI:2429073"
/db_xref="taxon:10090"
/dev_stage="13 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="spinal cord"
CDS 397..708
/codon_start=1
/note="hypothetical protein (evidence: decoder,NCBI CDS
Predictor,Longest-ORF)"
/note="putative"
/protein_id="BAC41122.1"
/transl_table=1
/translation="MSVGRLPTKRRQRCVYVFSPGLRKLLMSMVKPNSSSGCSSEGAG
GGACSPASVSAMAAAATGSLSPAADSRARRRAGFFSIRTCFRFPLNIILASSLGMLDE
A"
regulatory 2912..2917
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 2939
/note="putative"
BASE COUNT 763 a 798 c 644 g 734 t
ORIGIN
1 ggaaagcaaa aggaagctgt ggatcattct ggtgagggaa caaatccgct gctgaaattc
61 ctcaagttca tccccaattc acctccgtga caacaaaatt tgtcgcgcaa gaccgtccac
121 ccagacgccg ctggtcctcc ttgaccccgc cccctgcgat agcagcgcgc tcccgaagtg
181 agccccgggc gaccggcgac cagcaggaca gaagccctgc ggcgccctca cgcccaaacc
241 gcagcccccg cagctttttt ttgttgttgt tgttgtttcc tcgcgcccca ccgcagactc
301 accaggcgga tgaagccgaa gcctcggtcg cggttgatga agacctcgct gggctctccg
361 tagcgctcaa agaggcgctt gaagtcctcc tccgtgatgt ctgtgggcag gttacccacg
421 aagaggcggc agcgctgcgt gtacgtcttc tcgcccggct tgaggaaact cttgatgtcg
481 atggtgaagc ccaattcctc gtccgggtgc tcctcggaag gtgcgggtgg cggcgcctgc
541 tcgccggcca gcgtcagcgc catggccgcc gcggccaccg gttcgctctc tccggccgcc
601 gactccaggg cgcgaagacg agccgggttt ttctcaatac gtacttgctt caggtttcct
661 cttaacatca tcttagcaag ttcgcttggg atgctggatg aggcctagac gtcaaggtac
721 acacgtctcc acatgtatct atggaaacga agcaaggaaa gccaggtaac ggagggaagc
781 ccagcctccc cgcaatcacg cccgcggtgg ccgaacgctc aaaatggcgc tgcttcaaac
841 tgcagttgga agaagagacg cgggcaagag tcccgcccct ccacggcgcg cctgcgcaaa
901 tcccataccc gcgaaccgtt tgctagcatg gcgcgtgcgc aaactgtggc gagccttaga
961 gtccactcct agggacatcg caacctaaga tagtgcagac tattggagga gggggttgtt
1021 ttgttttctt gctctatgca actggaagag tatggacatg tatatccgag gctgacctta
1081 gctttcgacc ctccggactc agccctggga cacctaggtc agacactaca agtgaagtgt
1141 tagtaccagt acactccatc ctggcctaac tatataaccc ttgacctgcg ttgccaggac
1201 aacgaccctc aatcccacaa tccacttggc tcagttccca ccctcactgg tgtgacgtca
1261 ttttccgtat aaatgggggg ggggaaggaa ttaccaccac ccttctcttt ctctcacccc
1321 tctttctttt tccttttctc tgcccttcta cccgcttcgc cgccccccta tccctacaca
1381 ataaacctct cccacgtgga accaccttgg cctggtctgc tgtctggtct atctgctcaa
1441 aatatatgta gattaatatt atctgatatt aattaacata tcatgaggaa caaagtatat
1501 gtgtacaata cggtgtgaaa atacaataat ttagggaatg tatttgccct tttaaatatt
1561 acggcaacta tcattgaatg gaaaaagaaa aacttgcatg ttatcggcac tgggtagaca
1621 gggaggaaga taggcagttc aaggtcagcc tgggctacac agcaaagtga tattaataga
1681 aaaaatgctt cctttcattt ttcttgagac agggtttctt tgtatagccc tagctgtcct
1741 ggaactcaga gatccaccca cctgtgctgg gattaaaggc atgagcatat ttatacacag
1801 cacttaataa aacaaatttt cgaggcaatt aaaaacacct tttaacaggt atggtagctt
1861 acacctgtaa tcctagctag catttgggaa gccagaaaaa aactaacaaa aataataaag
1921 ctcttaaaaa tcatatttcc tgattaagca atccaatgtt ggtttttttc agtgctggga
1981 aatgaactcg agctttgcac acaccagtgc tgagccccac agcctcacaa tccaagtttc
2041 tgaaacaatc atgattttgc ttggtttagt ctatatagcc caggcagtcc tggaactctc
2101 tacctagaca aagctggcct tgaactcaca gagatcctcc tgcctgtgtt atctttgccc
2161 cactgcctct gcctcccaag agctgtgttt aaaggttcac accaccctga ctgtgttgtg
2221 gattattaac ttcagagtag aatttcctgg aatagattat aaaattaata cagacagacc
2281 atgaactcct atggaccaga caccaggctt aagtatcaca aacttactct gtaaggattc
2341 aggtaggaaa aagtttaaga agtgtgggca attctgaacc tctcacctca atcccctccc
2401 atacaaatcc cagcatatac aaggtgtatc ttcaaagacc acaaaaagta attaaactca
2461 cataccactc tacaaggtgt tcatcagttt ctcatgaaag tagacttttt tttttcttaa
2521 caatatgaaa ctcgggagct agagcgatgg ctcaactctt aaggcaccag ttgttcttgc
2581 agaggacctg acattcaact cccacagggc tgctcccaac ccagttgtat ggatctgact
2641 gataccctct tcaggccttg ggcacgtgac acacacatga cacacacata caggcaaaac
2701 actcatactt acaaagtaac tgcttgtttt gttttttgtt tttcaagaca gggtttctct
2761 gtgtggccct ggatgtcctg gaattcactc tgtagaccaa actaacctcg aactcagaaa
2821 tctgccttcc tcagcctccc aaatgctggg attaaaggcg tgcgccgcca ccaccacccg
2881 gcatgaaaac tattcttaag tgttaaagtc aaataaaagt aatgttcaca cagtctttt
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