LOCUS AK089615 1130 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830005B18 product:unclassifiable, full insert sequence. ACCESSION AK089615 VERSION AK089615.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1130) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by Dr. John Todd (Dept. of Medical Genetics Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome Trust/MRC building Addenbrookes Hospital Cambridge) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=F830005B18 FEATURES Location/Qualifiers source 1..1130 /clone="F830005B18" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:F830005B18" /db_xref="MGI:2428521" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="NOD" /tissue_type="activated spleen" misc_feature 1..1130 /note="putative" /note="unclassifiable" BASE COUNT 283 a 275 c 252 g 320 t ORIGIN 1 gcagtctttt cgcctctaca atcaagctct cccaataaac gtgtgcagaa ggatcctgtt 61 gcagcgtcgt tcttcctggc cagtcgagcg cgcgcaagag aagagtataa gagtattcca 121 ttgtgggtac atacctcgtt ttccacatcc gtttgtcagt tgatgacagc gatgatggtg 181 atgacgatga cgatgacgac aactatgaca atgacttcat actcaggttg aactggttaa 241 gatgatgcta gatttcatcc agtgtggaca atgaaacaca cagcagggac tgtcatctga 301 agagagggaa caggcaatgg actggtgggg ataaccggac aaggaacact ggtacttgta 361 aaggcaggct ctgaggattg gattcaggtc atgaggcttg cccgcaagtg gcatttgcca 421 tctcaccagc cctccccaat caaagacaat gtccacacga aggatgtttt aaatgaagcg 481 ccaagtcctc caagccaact gccccatgag cctctgttca atttattcga ctcccggatc 541 actgtaagaa tgctgaggtt acagctgtgt accacctcat caagctttct cctgggtttc 601 agggattgaa cttggttcat caagtttgtg tggaatgtat ctataaagac tggccttggc 661 acctctggta agaatgagct agtgataaac ctcatgtgtg atgatggctt ctttcaaaga 721 gaagcaccgg gatttgaaag ccattggtgg ggagcatcgt gaccctgtcc ttctggaaat 781 cctcaccttg actgcagagg acctggctgt tgctgtctta ggaatcagtt gggcttgtgc 841 tagttgacat atctaacatt tctttgtctt tctcttttct taaggataat ctttctacac 901 ttcacaatgt tcagattctc cagagttcta gacttgaccc accgttcatc ctaatcctct 961 ggacttctaa ccagatccct tctctccctg agccttcatt atcagccctc atagactccc 1021 tagctcatgg tagagccatg tcagattccc actgaatggt tctagccaat ggacctcaga 1081 cacttagatt cctcctcaca aagctaatct cttgtcactt ttcttttatg //