LOCUS AK087876 1748 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
full-length enriched library, clone:E330034L11 product:similar to
HERMANSKY-PUDLAK SYNDROME PROTEIN VARIANT (FRAGMENT) [Rattus
norvegicus], full insert sequence.
ACCESSION AK087876
VERSION AK087876.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1748)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E330034L11
FEATURES Location/Qualifiers
source 1..1748
/clone="E330034L11"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:E330034L11"
/db_xref="MGI:2426734"
/db_xref="taxon:10090"
/dev_stage="2 days pregnant adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="female"
/strain="C57BL/6J"
/tissue_type="ovary"
misc_feature 1..1748
/note="putative"
/note="similar to HERMANSKY-PUDLAK SYNDROME PROTEIN
VARIANT (FRAGMENT) [Rattus norvegicus] (SPTR|Q99MK5,
evidence: FASTY, 70%ID, 83.3%length, match=146)"
BASE COUNT 577 a 374 c 443 g 354 t
ORIGIN
1 gctcactagt gaacactcgc ctaatacacc agccccctag gtctgacccc tcaagtgtat
61 atacacagat ttctattttt atatgatact cctcaaaact ctagaaaaat gccaaaatag
121 tgatagtttc tttgaaaggt ctacatacag gctagtatgg tgacatacat tagtaatccc
181 agcctgatct acagttgagt ttcagccagc caggactaca cagagaaatc ctgtctcaaa
241 aaccagaagg aaagaattgt tttaagatac agaatttggg aaaagatgga aacgaaaaat
301 aaaaataaaa aacttatatt tctgttctga attgctgggt aactgataat accataaccc
361 aaagaaaata aaactgggag aggagagggt gtggtagaag agggtgtggc agggtaggag
421 gcactgcttt tgtggattta aggcatactg gtaagggctg gagagatggc tcagcggtta
481 agagcactca ctgactgctc ttccaagagg tcctgagttc aattcccagc aaccacatgg
541 tgggtcacag ccatctgtag tgggatctga tgccctcttc tggtgggtct ggagacagct
601 acttatataa ataaataaat cctttaaaaa aaaaaaagac atactggtaa aactatacag
661 tggaaatggg aagaggggac tggagcccat atcaaatcaa gaaaagaact caacaaattg
721 ggagagtctg ggctaggaag aaggctcagc agcagtaaag ctcagcccct ggagtcacca
781 ggctgtggtg gctgtgacac ctttaatccc acacccaacc tttactcctg cactcaggag
841 gcagaggcag aggcaggcgg atctctgagt ttgaggccag ctggtgagtt ccaagttcca
901 ggatagtcaa tgctacacag acaacccctg tctccaaaaa caacaagagc ccaaatttga
961 tgaccgggat ctgtgatccc caggtagagg tagcagcatt cattgggaaa actttcatat
1021 ctagaaatag agaaatcctg ccacagaaac aagatggaag gcaagaacct ccaacagagg
1081 ttgtcctctg acctatacat gcacaccatg gcatgcaagg gcgcgcgcgc acacacacac
1141 acacacacac acacacacac acacacacac acacacacag aggagagtct gagctagtgt
1201 accacaggaa gtgtagccca gtgggtagaa tgtttgcctg ccgtacatga aaccctgcat
1261 tcaatcacta gcactgaata aaaccagcgg tggtgcagaa gtgcatgcct gtagatcaga
1321 aatgcaaggc catctgctgc gggctcacag agtaagtttg aggtcaggct gagacatggg
1381 agattctgtc taaaagaaga ggagccgggc ggtggtggtg catgccttta attccagcac
1441 tcgggaggca gaggcgagcg gatttctgag ttcgaggcca gccctggtct acagagtgag
1501 ttccagggat acacagagaa accctgtctc gaaaaactaa aaaaaaaaaa aaaagaggag
1561 gagaggaaga gactggagga gagaaagaag agctggagcc actgtggtga cacacacctt
1621 taattctggc actcagggag ttctgggcca ccaaagacct gcatcaaaac taaagggtta
1681 gagagagatg gctcagtcct taaaggctag gctcacaatc aaaaggagag agagagagag
1741 agagagag
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