LOCUS AK085082 3853 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
library, clone:D430034L15 product:hypothetical protein, full
insert sequence.
ACCESSION AK085082
VERSION AK085082.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3853)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D430034L15
FEATURES Location/Qualifiers
source 1..3853
/clone="D430034L15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D430034L15"
/db_xref="MGI:2421951"
/db_xref="taxon:10090"
/dev_stage="13 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="lung"
CDS 899..1387
/codon_start=1
/note="hypothetical protein (evidence: CDS)"
/note="putative"
/protein_id="BAC39359.1"
/transl_table=1
/translation="MEFRILCIMRTLVLLHCLGSSQTSLLFGSCQSFHVTSNPDISTL
THILCILSSVSHALLVSPAQSFFLPLQLFWARVSTWSNGLYNTCPLCLASSLPCACIY
NVINFLGFRDNKSLCIALCNYFLLFCSRVPKTGRIRQSHTVGGNMASQRPHHSSWYPS
LQ"
regulatory 3840..3845
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 3853
/note="putative"
BASE COUNT 961 a 942 c 837 g 1113 t
ORIGIN
1 acactgccca tcccaaaagt tagggagcca ctggtttagt gagtcaaggt tcacggttcc
61 cagcccccaa gtgggggtgg ggtggcagtg acaacagctg tcatgctagt tctgaacagg
121 catttctggt ttgggtgtag agccgatgca agcggctgat atgaaacaat gctacagagc
181 tcagcctggg acaagcatgt aagtgggtca ggttagcttg ggcgaccctg ccaatcacat
241 attgcccaat ctgtcccaca gtgcctaggg caggcctctg gcagccctgc cagcctctgc
301 tttcattaag ccctcactag ctggccattg ctgccgaatt ttacatgacc aggagcaaca
361 gagcaagcgg gaaggattcc atttgaccag cgatttcact gcaataaaga cagctctttg
421 tggaatgtac ccttttattc ttgcttatct ggacccacag attcgaactc ttacacaaac
481 ctccattttc tcaatttcct acacacattc caaccgccca ccagttcctt tgcttccatt
541 ctttggatga taacccttgt cctggcacta ggtcacagtt atctccagcc catcaagcaa
601 cttctccact gtgacccagc ctcaggatcg ctgagaactt gctagggaat gcagagtctc
661 tggttcttat ccccacccca cccccacccc ccgacttctg actttcagat tcagaaggtg
721 gggcccagca atttgatttt tttttaagaa ccctctctga gtaagaacct ctaggccact
781 gagggaaatc gctgggcaga ctcaccggct acaggcattg tttcatcagc tgcctcaacc
841 aacctgaagg gcccctcctc ctctacagca ttaagctcta atttaatccc agccccagat
901 ggaattccgc atcctctgca tcatgaggac tcttgttctt ctgcattgtc tgggctccag
961 tcagacctct ctcctcttcg gttcctgtca gtcatttcat gtcacctcca acccagacat
1021 ttccaccctt actcatatcc tgtgcatcct tagcagtgta agccatgctt tactcgtgag
1081 cccagcccag agcttcttcc tccctctgca gctattctgg gcccgtgtgt ccacctggtc
1141 taatggattg tacaacacct gcccattgtg tctagcatcc agtcttcctt gtgcttgtat
1201 ctacaacgtg ataaacttct tggggtttcg tgacaataaa tctctttgta ttgcactatg
1261 taattatttt cttctattct gcagcagggt tcccaaaact ggccgaataa gacaatccca
1321 tacagttggg ggaaacatgg cctcccaaag gccccaccac agctcttggt acccgagtct
1381 tcaataaaca cccagtgttt cctccatcca gcctgtttgg caaatacctt aagtgcttgt
1441 ttttgaaaag acaacttttc cattgtttcc taagcaaaca ggaaagagag caccttggcc
1501 aggcatcttg tgagactggc aaacaggaag tttgggagga aagcctttgt gaggtacacc
1561 tttggaacac ctggtgagtt acctggggtg gcctatgttt gacacaaaga agtctggctg
1621 gaataacaga ggaaggcgac agggaacaga taccaggagg tggggattga gaggaaatcc
1681 attcaagtgg gcctgagatt tcggcgattg tttctccaaa gagtggtacc ccgcactgcc
1741 tgcctggtga gtgccaatcc aaggggtaag acaggagaag ggagggagat gccaaaggga
1801 acgggactag aatgctaaac ccctttcttt tgtttgtgct gattcataaa gccagagaat
1861 tgttttctcc cccaaataat gcagatttgt ggaagtctgc ctttgaaaga ttgcacctgt
1921 gtgtgatggc acgtgccttc cgtcctagca ctctgggaca gaagcagaga tgggacgatc
1981 tctgtgagtt tgaggccacc atagtctacg tgagtttcag gccagctaga gctacatagt
2041 gagactcctt cttgagtggg gagcagaatc atgttatttg ggccaagtta tatatttttc
2101 tagataaatt tagctcaggc agtttaataa acgattcagg taatttctgt tttcttttgg
2161 agctgatact aactctgatt ttcccattct atatgtcacc ttaaaaacgt aaaccatagt
2221 tgtaaaaagg ttttgtgggt tgttttgggt tttttgtttt tgtttttaat tctggagaca
2281 gggtttctct gtgtagcctg ggttatccta gaatttgttc tgtccagtct ggccttgaac
2341 tcaaagatct gcctgcctct gcctccagag tgctgggatt aaaggtgttc atcaccactg
2401 cctgttaaaa gttgtattta tttttgttca agttttatgg atctttatta gtgcacaaag
2461 acaagaaaaa aataccacct aatttaatcc ccaaaatttt agaagtggga ccccgtcctg
2521 aaaaagtgtc agtaaccgag atgaatggaa ataatgacat aaaagtcacc atcacagtag
2581 ctgagtgtac tgagcatgaa tacctgcatg tccttcacga cttgctttgc accttcagac
2641 cctaacccgc acgtttgacc atcttcactg tttgcacgat gaaggctttg actttggagt
2701 tcctcagatc actggaatcc tggctctgtt gaacgcccgt agcacagttt ggttagttat
2761 taacatctag tactaatatt tagttaagtg tatataataa gaccttggct tccttacctg
2821 aagtgtggat atgatgacat cttacacggc tgctctgaag atggccaggc atttaccaag
2881 aattctatga gtatggtggc ttgactataa taacgaaact ttctttattc atcgtgtata
2941 tctgatacgg caggcagagg ctagcatgtg ggaattggtt ctctccttcc actatgtgag
3001 ttcctgtgat ccaccacgag tcatcaggca agtgctcttc gacctgctga gccacctcac
3061 caaccctgac cggcaccctt gaagacagag gccagagcag agggaacaac atctgagaaa
3121 accacctgag ttacagcctt ggatcgactg ctcgctactt gtgctaccct tggaactctc
3181 cttaactgct cggttagggt ccctccttta gtccttgtac ctaactcatg aggtcactat
3241 agaaaacaaa gttataaagc aaaggtgctt aattccatat agggcactga aaatctaccc
3301 cacacattga ttattgttat agatttcttc ctgtgcttat tggcttggag attttctgac
3361 tttgtgagcc tggagaggat ccttcccatc cacgtgtgtc ttggccagtg ctcctatctg
3421 atggcccaca cctgctgggc cattggtcca tcatcattca tcctttcctt gattttttcc
3481 ttttgcttct gatttgtgag tgtgaggtcg gggatcaaac ccggggcctc taacactgag
3541 ctacaccttt gcaccttccc tgtttcctgt gttcttctct ttgtccaata ctcagaaaat
3601 aacgagttaa ccatgaaaga aatggtttaa aacatgggca caggaatgct gacaatatat
3661 ttgttgttca gatttattat tattattaac gagacaaggt tttactatgt agacccaact
3721 ggcttgcaat taattcacta tgtagaccct aggcccaaac tcagatatct gcgacctctg
3781 cctttggagt gctggaacta aagacatgta ccaccatgcc tggcaatacc atttttgaaa
3841 ataaaaaaag agg
//