LOCUS AK084984 1171 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
library, clone:D430021J02 product:CD48 antigen, full insert
sequence.
ACCESSION AK084984
VERSION AK084984.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1171)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D430021J02
FEATURES Location/Qualifiers
source 1..1171
/clone="D430021J02"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D430021J02"
/db_xref="MGI:2421804"
/db_xref="taxon:10090"
/dev_stage="13 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="lung"
CDS 69..791
/codon_start=1
/note="CD48 antigen (MGD|MGI:88339 GB|X53526, evidence:
BLASTN, 99%, match=1153)"
/note="putative"
/protein_id="BAC39328.1"
/transl_table=1
/translation="MCFIKQGWCLVLELLLLPLGTGFQGHSIPDINATTGSNVTLKIH
KDPLGPYKRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKED
KGTYYMRVLRETENELKITLEVFDPVPKPSIEINKTEASTDSCHLRLSCEVKDQHVDY
TWYESSGPFPKKSPGYVLDLIVTPQNKSTFYTCQVSNPVSSKNDTVYFTLPCDLARSS
GVCWTATWLVVTTLIIHRILLT"
regulatory 1151..1156
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1171
/note="putative"
BASE COUNT 355 a 265 c 227 g 324 t
ORIGIN
1 ggaagggcag gcgccctgac ttctcttaca gttgtctcca gtgttctggg gaagcttctc
61 taagtattat gtgcttcata aaacagggat ggtgtctggt cctggaactg ctactgctgc
121 ccttgggaac tggatttcaa ggtcattcaa taccagatat aaatgccacc accggcagca
181 atgtaaccct gaaaatccat aaggacccac ttggaccata taaacgtatc acctggcttc
241 atactaaaaa tcagaagatt ttagagtaca actataatag tacaaagaca atcttcgagt
301 ctgaatttaa aggcagggtt tatcttgaag aaaacaatgg tgcacttcat atctctaatg
361 tccggaaaga ggacaaaggt acctactaca tgagagtgct gcgtgaaact gagaacgagt
421 tgaagataac cctggaagta tttgatcctg tgcccaagcc ttccatagaa atcaataaga
481 ctgaagcgtc gactgattcc tgtcacctga ggctatcgtg tgaggtaaag gaccagcatg
541 ttgactatac ttggtatgag agctcgggac ctttccccaa aaagagtcca ggatatgtgc
601 tcgatctcat cgtcacacca cagaacaagt ctacatttta cacctgccaa gtcagcaatc
661 ctgtaagcag caagaacgac acagtgtact tcactctacc ttgtgatcta gccagatctt
721 ctggagtatg ttggactgca acttggctag tggtcacaac actcatcatt cacaggatcc
781 tgttaacctg acaagaactc ttctcaccca agaaggcaac ttggaagcac agagtcttgc
841 cttcatccct agcagtgttc ctagccagcg aagcaactct ggctctattg gacaaaggaa
901 aatgtgttac tgaacgtctg cgagagtttg catgcatgct ctatgaaaca agcacaggac
961 cttgtacagt gctccaccac tgacctgtgt gcccagtcct ttacaaagat ttcaaatcaa
1021 ccttttaaaa actgtgcata atatctaatt ttatataccc tagttgtttc ccaacatata
1081 ttaaagataa atgcattctt tttaccaaaa tgtgactata ttattttcat gttttcatat
1141 ctctttttaa aataaattct tttaaaaaac t
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