LOCUS AK083347 2186 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
full-length enriched library, clone:C920012F17 product:T-cell
receptor beta chain, full insert sequence.
ACCESSION AK083347
VERSION AK083347.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2186)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=C920012F17
FEATURES Location/Qualifiers
source 1..2186
/cell_type="thymic cells"
/clone="C920012F17"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:C920012F17"
/db_xref="MGI:2418360"
/db_xref="taxon:10090"
/dev_stage="2 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS 146..499
/codon_start=1
/note="T-cell receptor beta chain (MGD|MGI:98578
GB|X00439, evidence: BLASTN, 100%, match=261)"
/note="putative"
/protein_id="BAC38878.1"
/transl_table=1
/translation="MQKSCDENEGTPQNTPKADEGHPSEDPPQQAGETLQASGENVRE
ETEGSHRGEPAEPSPEPKEDTPARHLNPEEVIRGVDELERLREEIRRVRNKFVLMHWK
QRHSRSRPYPVCFRP"
BASE COUNT 612 a 448 c 491 g 635 t
ORIGIN
1 gagtagcagc tctgtcctgc tagagaagag tggcccagct acttccagca ctcttgatct
61 tttgagcgcg acataaatcg aggtgcaaga agagaggaaa atctccaggt acctacagga
121 ttaattcatt aagaaaataa tcaacatgca aaagtcttgt gacgagaacg aaggaacacc
181 ccagaacaca ccaaaagcag acgaaggcca tccttcagaa gatccaccac agcaggcagg
241 agaaactctt caggcttctg gagaaaatgt gagggaggaa actgaaggga gccatagagg
301 agagcctgct gaacccagcc cagagcccaa agaggacact cccgcaaggc atctgaaccc
361 cgaagaagtg ataagaggcg tagatgagtt ggaaaggctt agggaagaga taagaagagt
421 aagaaacaag ttcgtgttga tgcattggaa gcaaagacat tcccgaagcc gtccttaccc
481 tgtgtgcttc aggccttgaa atcgtttttt tctctgatat tgaaatgtgg ctgctgcttt
541 ctttctctta gcattttctg atgtatcttt gaacttcatt ttacttttaa taataattac
601 ctggcggtat tttctgttat gtagtttcgt tgttaccagc atctcattgg attttggatt
661 tttgacccat tttccacgtt tatctttcag ttggaaagtt tcacatttat gcatggaaat
721 atacaattag acagcaaatt gaaaaaaaca gcagcatagt taggatcaac tcacatagat
781 aggaaaattc ctaattatgt gtgtacatgt ataattatac gtatcaaaaa atttacagtg
841 cttatttttg gtgtggtgtg ttttaatttt gccttttact tatgttgatt ttttttaatg
901 aatacgtgtc tcacaaagaa ctgcagattt ttttaataag tgggagttaa ttaaaattaa
961 tttgtaacca gcttgtagag gcaataaagg cactaaactc ttgatgaact attaaacaga
1021 aatgtaaacc tggaattccc tctggcttcc ttagccagag gaataaaact ggcaatcatt
1081 atagacacac ttggttaaga cttggtcttt tcatggggga aatacttgcc tcacagggat
1141 ctgtgtggaa catagtatgc catatttgag agaggacatg gcctcactca gcctgtgttc
1201 agatgcagag gggtgggggc tgggcttccg tgccattttt cttctgctga gttcccaccc
1261 ttttcttccc tgggacctgt cctgcctacc aactagggcc aagtctgctg gatcctgcca
1321 gtggggtctt aagtataaag atcccgctgg gtttccttga attccagttg aacccccagc
1381 cccagtgttc agttacaggt ggtgccacta tagctggcag tttgtttggt ttgaagcaat
1441 gtcttattct gtagcccagg ctagctaggc tgggattcat ggcaatcctt cagcttctga
1501 aatgttggaa tgttaactcc ctttaactcc agtgacaggg gatctggtgc ccttttctgg
1561 tctctacaca gacatggtac aaatgggagg acactgacac tcttcagaca tataagaagg
1621 tggcgtcaga tcccattaca gatagttatg agctaccatg tggttgctag gaattgaact
1681 cgggacctct ggaaaagcaa ccagagctct taaccactga gccatctctc cagcccccaa
1741 cataatacac atgtattcat gcagggtcat acagatttca aaaaaagttt taaaaactgc
1801 tctaggttaa tgattcctgc agaatcctta gcaaaagcaa tccctttaat tttcaacatg
1861 gggcgttttc tctggagagg taataactgg ataatattaa gcatatttga aagtagacca
1921 aggtatctgt ttgaatgaaa actttgggag aattcctggg tatttagggt ggtgtttatt
1981 gtttttattg tgctttttga gacagtattc catgtacccc agacttgact ttgcttatta
2041 ccttaagcat ctgatcctca agacccctct tcccgagggt gagcgagcgt tgcaggtggg
2101 tgccgccgct ttcagttgat gccggggatc agattcaagg ctttgtacac agtaggcaag
2161 cactctgcca acagagcttc acaccc
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