LOCUS AK081167 1899 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
enriched library, clone:B930095G02 product:unclassifiable, full
insert sequence.
ACCESSION AK081167
VERSION AK081167.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1899)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=B930095G02
FEATURES Location/Qualifiers
source 1..1899
/clone="B930095G02"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:B930095G02"
/db_xref="MGI:2413279"
/db_xref="taxon:10090"
/dev_stage="10 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="cerebellum"
misc_feature 1..1899
/note="putative"
/note="unclassifiable"
BASE COUNT 330 a 607 c 551 g 411 t
ORIGIN
1 acactgcaac taagggccag aggagaacga gggactggga ggggttctac cgctactgcc
61 cgcagattgg actcaggagc aagaccatgg gggccgcgtg cgcagcggcc gctccaggca
121 ttccaagctt ctgccgccag aagacaaaaa gccccactcg ccccaggagt agcggtgtcc
181 tgcagagaca cctcctaaca acccgatgga gccttttcta aaacgccatt tagccctcag
241 gttttgggac cccggcgagc cccaccaagc gtccttcacc ccggtcggtg ccctggccgt
301 ctgttgggca ccgttcgtct gacgacctac ggctcactgc ccacccggcg tcacccaccg
361 tgcaccagcc tccgcatgtc ctggtaacga gcccataagt gcgcgctgag gtccgcgccg
421 tctgcgggcg ccgagcgcgg ggtgctgggg cagtgggctc cgggacccgg cgggccgcag
481 ccagggcagg agggtgagga cgaggcggcc cgcggtccgc tgtggcctct gcacagcagc
541 aagcgcctag ctgtcgcccg cagtccggca cccgccatgc cccctgcgcg ctgccccggc
601 cgccctccgt ccgtccgctg gcccgcctgc ccgccgctct ccgactgccc gcccgccacc
661 gtggccgcgt gcttctcaag gcggccggcc aatgggggag gcgcgcggag cccatccggc
721 caatggacgc accactcggc ccagggggcg ggaggtctcc gggacggggg cggagcgggc
781 tccgaccccc gcctccttgt cccctgctcg gctcaggggc tctgcgcccc cctttggtcg
841 tctcggtggc gatggccggt acctttcctc ccttgagcgg gaagtcgcag agccccgggt
901 ctccgcgaga tcctggacgg ccgaggagca agagcgctcg agtgtactgc tcttcctttg
961 cccaagggtc tttttgcccc tcccctgctc ttctgtccta ttctttccag accagttctc
1021 ctgccccggg gcctcgtgcc cctgccccag tttctgactg actgcacgtt ccactggagc
1081 tgaggtcgct aagacaacaa gagctctact tgctttcagt accagtccca agctggctaa
1141 gaccacttgg cctgatgggc agctgacgcc tgctgaggca gcattttctt tgtattgcct
1201 ggtacccaac ccaggtgatc gacttaaatg aggagcctat ctactgggca tacgcttctg
1261 gctgtgggcc aggatcactg cagccaccag gttttggcgg ctgtaaaagg atgggccaga
1321 cggtgcaggc ccccagttga attgccatgg tttttttcaa gcgctgtctc aatgaaattc
1381 ttttcattcc atccacttct gttttcttag cttgcaggtg tacactagga aaggctgggc
1441 ccaatgtcca ttgttggtgg tgagttgccc aactgaacac acgtggctgt tgggtttaag
1501 gttgtgtgta atgtgtacgt ttgtagtttg cctgtaccta tgctgaggat cgggtgtatc
1561 agattctggt ctgggtagtc atggatgccg aagggtgggc ttatgggtgg acccttgtag
1621 ggtccattga cctaggtggg ctgtgaagac ctggccacat gtggattcct tccaagtgga
1681 tgacacttta caagtttcag tcctcagatc caagagaaat ggcaccaagt gccaggcgtt
1741 cactgtgtgt ggcttctcca gtaggtacct ccaggcaggc tgcgcttagt cagctgttta
1801 tgaccccccc ccctctttct ctgccttcat ggttccctca ctgcctctat tccttcccca
1861 ataaactcct ttcataccaa aaaaaaaaaa aaaaaaaag
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