LOCUS AK080825 2620 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male corpora quadrigemina cDNA, RIKEN
full-length enriched library, clone:B230325K18
product:hypothetical protein, full insert sequence.
ACCESSION AK080825
VERSION AK080825.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2620)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=B230325K18
FEATURES Location/Qualifiers
source 1..2620
/clone="B230325K18"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:B230325K18"
/db_xref="MGI:2411326"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="corpora quadrigemina"
CDS 2243..2611
/codon_start=1
/note="hypothetical protein (evidence: CDS)"
/note="putative"
/protein_id="BAC38038.1"
/transl_table=1
/translation="MHIHAILFYFFNKWDVIYTSSPRTGAESGGWITEFKTSLVVGQI
GLYSEVLCSVCFEYAGAHLQLVMCGNERKCMLFQLILWVLGVEMASCLIAKILSFLLI
TAVLIFPYVKWHMSINHRLC"
BASE COUNT 662 a 455 c 574 g 929 t
ORIGIN
1 ttctttatag accatgctgg ccttgaacag aggtctgttt gcttctgtat ccatagtatt
61 gggattaaag ttgtgtacca ccaaccccca gcatgtaagt aacatgcttt aaaaaaagtc
121 tcatttttct ctgattaaag acgaggtgta tcatcacatc caaccaattg catagttctc
181 tagcatgaac ttgcttttta taggtgacac tcacaaagaa cagtcacagt taaaactgcc
241 tgggcaaaga tgggttttgt gttgtggttt acaagattac agtcttcata atgttgacaa
301 gagctgacca ttgatttgta cctccactga aggttttttt tttttaagat ttagttatat
361 gagtacactg tagctgtctt cagataaacc agaagagggc atcagatcct tttttataga
421 tggttgtgag cccaccatgt ggttgctggg aattgaattc aggacctctg gaagaggagt
481 cggtgctctt aactgatgtc atctctccag tgctccactg aaggtttttt tttttttttg
541 gatagtcttg ccttttcatg cctgctatag gagtccttga aaataatcca gggacttggg
601 agagatggct gagcagttag agtaactggc tattattcca ggagtcctga gttagatttg
661 cagcaaccac atctatgaga tcttgtgccc tcttctggta tgaaggtgta cacagcacat
721 aaaatttttt taaaagtatg aatcctaggt ggatggtggc gaataccttt attctcagca
781 cttgagaggc aggctgaact cagttcactg tcagcctggc tagttgcagg acagctaaaa
841 aaaaccaaaa atcagaaact taccagtttt cccactgctg ggattataga caggcaccat
901 gttggcctga tttgtagaga atttctacgt ttgtatagaa ggtgataact gaagcatacc
961 ttacatacat tgagacctgt agctagtaag tggtttcttg ctgctgagtt gtgtccctct
1021 cccctcaact actatcctaa gtcataagtt aaagtttgtg ctgaagtgta gttcccctag
1081 actgggtttt tttgtgtagc ccaggctgtc ctagtattct tgctctgtat accagactga
1141 ccacctagag atgaattatt tcatctacag agctagtgac tagaggcagg aaattatggc
1201 tctattagag gctcacctgc ctgcattgaa ggagtaggca tgctctaaag gttgaatgtt
1261 ccaagtgctc tttgggcagt gctatgttac acttggtata tgtgtgggaa ctcttaggcc
1321 cggatatgaa ctcttgacat gctatttgat gtgttaattt ggtttgagaa gcactctttc
1381 acatactagg gtgctaatat tttagattgt atcgctaatt tttacttttt aaaaattcat
1441 ttatgtgtgt attgtttgca tgttaggtgt gggtatgtgc agactagagg actgtgggaa
1501 tcacttggag gtagttatta caggcagtta atcgaatgtt gtgggtgctg ggaattaaat
1561 tcaggtccta taggatctag tatgtgcttt cttggtattt tttttttctc ttctttttga
1621 aactatagcc ctggctgtca tagaatttgc ttattatgag tttgttgacc ttggagacat
1681 cctttcctgt cccaaagttg aagtttttta ttaccagata gctagtgccc agtgtttggt
1741 attggttagg tttagttata gtaatgtgga tagatgaaat aaatggatga taaagttgtg
1801 acatccagtg ctttgttttt tgttagcttt ctgacgtctg cttttagctt cattcttatt
1861 acttaccagg caagtaatag cctttcatgt gtctcttaac tgattataga tttagttctt
1921 tgaattttta ttttcagtcc tgtggattga acctagagaa tcactgctag acaagagttc
1981 ccaatgtctg cacattgatt tattttgaac agggactctg ttgtacaggc tggtatcgaa
2041 gtcactgtac cacaggttgg ccctgcattc atgatttttt tttgcctccc tcagcttttt
2101 tgaatggctg gcaactttta tacattttat acaaatttat tttatacaaa tgttactgaa
2161 ttactggaaa cggcttatct ttttattgta ggtgcttgta attgaactcc gacctatcta
2221 tgtgctgtgt gtttacacat ttatgcacat acatgccatt ttattttatt tttttaataa
2281 atgggatgtg atttatacat ccagccctag gactggggca gaatcaggtg gatggatcac
2341 tgagttcaaa accagcctgg ttgtaggcca gataggccta tatagtgagg tactgtgttc
2401 tgtctgcttt gagtatgctg gtgcacatct gcaattggtt atgtgtggaa atgagaggaa
2461 gtgtatgtta tttcagttga tcttgtgggt tctaggagtt gaaatggcat catgtttgat
2521 agcaaaaatc cttagctttc ttttgataac agctgtgctc attttcccct atgtgaagtg
2581 gcatatgagc attaaccaca gactatgtta atttgcttac
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