LOCUS AK079217 1233 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male urinary bladder cDNA, RIKEN full-length
enriched library, clone:9530037G02 product:unclassifiable, full
insert sequence.
ACCESSION AK079217
VERSION AK079217.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1233)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9530037G02
FEATURES Location/Qualifiers
source 1..1233
/clone="9530037G02"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9530037G02"
/db_xref="MGI:2399686"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="urinary bladder"
misc_feature 1..1233
/note="putative"
/note="unclassifiable"
BASE COUNT 344 a 322 c 302 g 265 t
ORIGIN
1 gagcggagct ctccaccagg gggagaagga tgcatagacc ctgcagaaac agcgcgagtg
61 cagccgtgac tgcgagcgac cttacgcacg ccctgctcgc acttccacgc atggaccaga
121 gccttgtggg taggcagcat ctcctgcact tctacagaag aaagcagaag ccccgaccaa
181 gccgttccag gacaaagttc ctaggaacgc gcgctccgcc aacttcaaaa cgcaagggcg
241 agccagtcaa aagctggagg cgctaggccg ggcctcgtac ctgagggagg tgactcctca
301 gcagacgcta gacagaggtg gtagcaaagg gccccagccc agagtttccg gccctgcgcc
361 gacggcggct cctcccccgt ctccacggca acgcgacccg cgccggaagc tgctctgtcc
421 agcttagtgc gctctgtctt ccaggaaaca gagacttctc tctaagctcg gcttcctacg
481 gttttcttgc cctgaagttt ctgcgcttct gagaagcggg tcactagtta caactcctgc
541 atgggaccgg tgtgagacgg aaaagtgtct cttttcattg cgtggtggct cacgtcggta
601 atctccggct caaacagccg aattttttaa aaagaacttt cagaaacaaa gtatgaagtt
661 tcatactaag aacagggaaa actagtgggt gggtgtctga agacgaaaac caaggggcag
721 gagatatgac tcaccagtta aatgcacttt tcatttatcc agactcccaa tacccacacg
781 gtggctctta aaacagccgt gactcccaag tcgcgctccc gtttgaccta tatgcaagca
841 aaacattcat actcaaaatt tttaaaaaga ttaaacccaa gaaatatggg ttttgccctt
901 ttacaaatgg taattttgta atccaaagat ttaaaagcaa ttattggtaa cagtcatttg
961 tgggaggctg aggcaggggg atccctgcag ttaaagaaaa cctggcctaa tgagtgaatt
1021 ccagtaccgc ctgagctaga atgagactca gaatggacaa gaaaagtgtt taaatccagt
1081 ttgctgaaat gacaagatgg ctcctgagtc ctaggacctg agctcaatct ccagtattcc
1141 tatggcaaaa gagaactcgc tcttagaagc catcctttga cctctagcca caagccatga
1201 ccatccatgc acacaaaaaa taaagataat ggg
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