LOCUS AK079103 2770 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male diencephalon cDNA, RIKEN full-length
enriched library, clone:9330195C05 product:weakly similar to
X-LINKED RETINOPATHY PROTEIN (FRAGMENT) [Homo sapiens], full
insert sequence.
ACCESSION AK079103
VERSION AK079103.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2770)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9330195C05
FEATURES Location/Qualifiers
source 1..2770
/clone="9330195C05"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9330195C05"
/db_xref="MGI:2398647"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="diencephalon"
misc_feature 1..2770
/note="putative"
/note="weakly similar to X-LINKED RETINOPATHY PROTEIN
(FRAGMENT) [Homo sapiens] (SPTR|Q07826, evidence: FASTY,
52.5%ID, 60%length, match=167)"
BASE COUNT 792 a 535 c 566 g 877 t
ORIGIN
1 tatttaactg aatctactag atataaatcc atctttataa ttttgtaatg tctgatctta
61 taaataccca cctgaggttt ctgcatatta gtttcctttt atgaggctag tctgggctga
121 ccttggatta ctggtgtctt gcttcagcct ccaaagagct aggattacag gcatagacta
181 tcattcccag ctaaatgcct tcataggagt atgcttgtat gcagatattt gcagtcagga
241 gcactaagtt tggggctgtg ttttttaatt tcatttataa aatatgtctc catttttgta
301 tgtcttagat ctataatatt tcttttgttt tatagttata tatgtttttt taaagaaaaa
361 tatgctttga aatttggaca gaagggcagg cttgccaatg agttaatgtt ctgtattaca
421 atataaggaa aagaatgcca acttaaggtt gtgctctggt ttcaagtttg attcctttgt
481 gtagtatgta cacagaggtt gtggttaaaa tgtttaactc agaagagcct tagttgtgta
541 tctgaaaatg agtggtagtg cccacaggac ttgtgagtat gcagtgagat ggtcactgca
601 gtgcctcaca gctcctcata aagcaggtta caccaggtaa gcactgccag cgcaagccca
661 tgggcacctg cacaagaggt gcgctgggca atgtctctgc tcaaggtgag gctgtaatga
721 cctcttgtag cctcctaaca atgtttcctc cttacagtta ctgaagttaa atacagcgtt
781 cttcttttct tactatttat acttgtctta cttgtttcaa aaaatgtagg tgagtaactt
841 cttttttttt ttcttttttc ccaagacagg gtcttgctat gtagcccggg ctggcctgga
901 atcgctatat tgcccaggct ggcctggaac tcgggatcct cctgcctcag cttcatgagt
961 gctgagatta caggcgtgcg ccaccacgcc cggtttaggt gagtaactct taattaagta
1021 ctgcaacaag ttattttctt aatttgattt accttaacat cagcataaac atttaagatt
1081 atatcacaaa agatttaagt tacttccttt cctataaaaa tgacaaagta aagtacattt
1141 cataataaaa gtgcagtgca cgtttagact ggctttaatc tccaccatta aaggaagcaa
1201 agaagcaaga aagggagggg ggataagtaa tgacatcact ctaaaatacc tgaattatgc
1261 tattatgtgc ataattttaa cagataactt caatgtccta tgactagtta ctgtaagcaa
1321 attatgtaaa tctttataat gagaatagta tgaaatcaaa cagctcacag taattatagt
1381 gctttatgca aggaagagag ggatcttttt aataagacaa gaaaggaaac caaataatat
1441 accagggatt tgcacttcag ataaaactag ttgtgcctgc acatgaccga taccagaaat
1501 gagccagaga gagtcacaaa ctagaatagc gtgagacctg ggtgagcttc gtgtgtgcag
1561 tatgtaccct tggaagagca ttcctagtcc atgttcctta ttttaagaca agcaggggct
1621 aagacagagt gtattataaa atcagagacc tgagctggga gcactggccg gtcctgggtt
1681 tgattcccag cacccacgtg gtgcctcaga gctgtctgta actccacttc caagggatcc
1741 atcctcttcc tgcttctgtg agcatcagga agatatgcag acataagtgc aggcaaaaca
1801 cccacacata taaaataaat tttagaattt aagaaaggcc attactttat tttttaaaaa
1861 aagaccattt acttcctacc ctgaaggtag gtccttgaag ctgtgaacag tattctagta
1921 gaataagcag gcttgagagg gaagttatat ggggttctaa tcaaaattaa aagcttggaa
1981 tttatttggg tccccctgta ttaactaata aatacaatag agctatggtt ctgatctgta
2041 attatcaatg gaggtttatg taaacatctc atatggttgg aagatatgta tttagcatga
2101 tttccatgcc ttacagtcta ccccaataaa cctgcagata aaatatctgt gagtttacac
2161 atgtgtgtat ccttttctgt cccttccctt atatcctgtc tccacaccct cctcagccct
2221 cccctacatc aaagcttgtg gtccttttcc atctgtgtac taaaaggttc ctttgtaaag
2281 caggccattt gtccgtcatt gtttggggtg caaacagtgg taagataccc tgtcactgat
2341 ccgtgtgctg tgaatggcag ctcctctctg gacagttggt ggggggctga ggatattcct
2401 gagaggatta tttaaccttt caatttagag ggcacaaagc ctcgctgatt aatgaacttt
2461 ctgatggttg ccgataagcg gatctattgc tttatttcct ctaaaagtga ttccttctcc
2521 tgtccatatt actataatct gaaacataaa tgtggcaaat agattaaaaa actgcactaa
2581 agagtttatc tggctggcaa actgaaggag ctaaattaaa attggtaatg acagcagtgg
2641 ctcagcctca tatatggttt ttaaatgcac tgtgtatttt gaagagactt attctccagc
2701 ttgcctggta atgactgctt ttggtgcagt atggggctgg cttctgttat ccccacctca
2761 tgcccccccc
//