LOCUS AK077851 1689 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length
enriched library, clone:5930420B01 product:unclassifiable, full
insert sequence.
ACCESSION AK077851
VERSION AK077851.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1689)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=5930420B01
FEATURES Location/Qualifiers
source 1..1689
/clone="5930420B01"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:5930420B01"
/db_xref="MGI:1910964"
/db_xref="taxon:10090"
/dev_stage="13 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="forelimb"
misc_feature 1..1689
/note="putative"
/note="unclassifiable"
BASE COUNT 512 a 390 c 365 g 422 t
ORIGIN
1 aactgaaagg agaagaggga agggaggctg tgatccagat ataagtaaat aaattttaaa
61 aatagaaata aataaaatta gaaataaaaa gtacaagaaa aaggtaaagt aaaattaaat
121 taaaaataaa aatttaaaag cagggactgg agagatggat cagtggttac gaacactttt
181 tcttttttct ttttttttta agatttactt attatacata agtacactgt agccgtcttc
241 agacacacca gaagagggca tcaaatctca ttacagatgg ttgtgaacca ccatgtggtt
301 gctgggaatt gaactcaaga cctctgggag agcagtcagt gctcttaacc actgaaccat
361 ctctccagtg ccaagaacac tttttcttat aagagtattt cccaagcacc cacatggtag
421 ctcactgctg tctataactc cagtttcaga ggatccaatg ccctctttga tctccatagg
481 caccaggcat gtatgtggta cacatatata catgcagaca aaatattcat aaacactaac
541 aataaatcta tagataaata aataataaaa aattttagaa caaaaatgaa ttcttgtttg
601 ttgacatagg gtctcaggta gcccaagcta gcctggagtt tactatgtag cccaaggtga
661 ccttaaattt ctgatctcca gcctccacct ctcaagtgtc agtaacaacc aaatttcttc
721 atggcatggc atgaatatat actagataaa attatcaata caaaaaggct tctaaagtgc
781 tagtcttctc tggtaagagg cttatgtggt atttaataga aactcaacct ctcattatga
841 ggaatgaacg cacataacca gcaataccaa tggcaatagc atgcaggtac acataggaga
901 cccctgggaa atccacagga ggacagctgc agaataaaga tgaattcagt tatgggaagc
961 ttggttcctt tcgaggtgtg agtatcaaga agcccgtcag cctcagctct tctttggcgt
1021 tcgttcccta ctccactcca gtagctgtgt gcactgcaag cctgcagcta cccagaaaat
1081 gcctctggac cactaagctc ttgtcgcttt gtcctggaag tcagatggcc agcttcccca
1141 cctccccgcc cccaaccagg ctaggcatct gaccagagtt acagatgtgg gtggctaagc
1201 ctgtgaggct gattctctca gaaagatgga ttgccctcac ccatccactg ccagcttact
1261 cactcaggcc ctgaggtctg gggataggct gcaggaggct ccagactgtg atgatgcaca
1321 tggaaaagaa tgcagtccat gggcagctgt aagccagagc ctgtgcatga catggcttct
1381 ccacaagtgc ctactctaag ggctccaagc attctagcca ggccacgggg cagcaggtgt
1441 gagctgcaaa cacaggaagg aacaaacaag ctctacagca gccgcccagt cagagaccct
1501 tctacctcat cattcgttca ggaatgagaa agttagaccc tttatccctg gacggccacc
1561 agagtatctc catctcatca tcctctcagc taggaagctt tcctgggacc caggagcatg
1621 tgcttggggc ctgggcatac gaagcacttg cttggcatgt gtgaggccct gttgagttcc
1681 tagccatgg
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