LOCUS AK076203 1129 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 18 days pregnant adult female placenta and extra
embryonic tissue cDNA, RIKEN full-length enriched library,
clone:3830431N12 product:T-cell receptor beta chain, full insert
sequence.
ACCESSION AK076203
VERSION AK076203.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1129)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=3830431N12
FEATURES Location/Qualifiers
source 1..1129
/clone="3830431N12"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:3830431N12"
/db_xref="MGI:2390262"
/db_xref="taxon:10090"
/dev_stage="18 days pregnant adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="female"
/strain="C57BL/6J"
/tissue_type="placenta and extra embryonic tissue"
CDS 193..546
/codon_start=1
/note="T-cell receptor beta chain (MGD|MGI:98578
GB|X00439, evidence: BLASTN, 100%, match=261)"
/note="putative"
/protein_id="BAC36252.1"
/transl_table=1
/translation="MQKSCDENEGTPQNTPKADEGHPSEDPPQQAGETLQASGENVRE
ETEGSHRGEPAEPSPEPKEDTPARHLNPEEVIRGVDELERLREEIRRVRNKFVLMHWK
QRHSRSRPYPVCFRP"
regulatory 1109..1114
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1129
/note="putative"
BASE COUNT 353 a 211 c 241 g 324 t
ORIGIN
1 gagcagtcga cgtgtgcaga agtccttata gtctaggccc agttccccag tagcagctct
61 gtcctgctag agaagagtgg cccagctact tccagcactc ttgatctttt gagcgcgaca
121 taaatcgagg tgcaagaaga gaggaaaatc tccaggtacc tacaggatta attcattaag
181 aaaataatca acatgcaaaa gtcttgtgac gagaacgaag gaacacccca gaacacacca
241 aaagcagacg aaggccatcc ttcagaagat ccaccacagc aggcaggaga aactcttcag
301 gcttctggag aaaatgtgag ggaggaaact gaagggagcc atagaggaga gcctgctgaa
361 cccagcccag agcccaaaga ggacactccc gcaaggcatc tgaaccccga agaagtgata
421 agaggcgtag atgagttgga aaggcttagg gaagagataa gaagagtaag aaacaagttc
481 gtgttgatgc attggaagca aagacattcc cgaagccgtc cttaccctgt gtgcttcagg
541 ccttgaaatc gtttttttct ctgatattga aatgtggctg ctgcgttctt tctcttagca
601 ttttctgatg tatctttgaa cttcatttta cttttaataa taattacctg gcggtatttt
661 ctgttatgta gtttcgttgt taccagcatc tcattggatt ttggattttt gacccatttt
721 ccacgtttat ctttcagttg gaaagtttca catttatgca tggaaatata caattagaca
781 gcaaattgaa aaaaacagca gcatagttag gatcaactca catagatagg aaaattccta
841 attatgtgtg tacatgtata attatacgta tcaaaaaatt tacagtgctt atttttggtg
901 tggtgtgttt taattttgcc ttttacttat gttgattttt tttaatgaat acgtgtctca
961 caaagaactg cagatttttt taataagtgg gagttaatta aaattaattt gtaaccagct
1021 tgtagaggca ataaaggcac taaactcttg atgaactatt aaacagaaat gtaaacctgg
1081 aattccctct ggcttcctta gccagaggaa taaaactggc aatcattat
//