LOCUS AK073903 2300 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033073A22, full insert
sequence.
ACCESSION AK073903
VERSION AK073903.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2300)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2300
/clone="J033073A22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 326..2125
/db_xref="Osa1:LOC_Os03g43590"
/note="(Rice Genome Annotation Project) LSTK-1-like
kinase, putative, expressed"
/note="mapping to R03-TIGRv4S1-001117R (Chr.3: short
arm=24306172, long arm=24311484, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG93703.1"
/translation="MEQYEVLEQIGKGAFGSALLVRHKVEKKKYVLKKIRLARQTDRT
RRSAHQEMQLIATVRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKRATGDHFS
EEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTRDQSIRLGDFGLAKILTSDDLA
SSVVGTPSYMCPELLADIPYGTKSDIWSLGCCIYEMTALRPAFKAFDMQALISKITKS
IVSPLPTRYSGAFRGLIKSMLRKSPEHRPSAAELLKHPHLQPYVLQVHLKSSPARNII
PSHQSPIDKVKKMTFPTESMCRSKGRRNSLGNERIVTFSKPSPERKFTSSIQSIKDYS
TTRSVKDLSIDVSLVEEVSSKTTFTTRTSSIVKTPKRTPSKTITTPQLEPPKVSYNRV
NRSELLSRTPVNRSARVIRRASLPLPLPSSETPKRGVSSISILEQLESPDVSVNSPRI
DRIAEFPLASSEDPPFLKLHGRRSPTPTPQHCVIDQSITKDKCMVEAFHIIDVDDDDG
RSDSSSGRNNAAAAASSRAGSSESTRQRRFDTSSYQQRAEALEGLLEFSAQLLQQERY
DELGVLLKPFGPEKVSPRETAIWLTKSFKETGL"
BASE COUNT 624 a 605 c 538 g 533 t
ORIGIN
1 gctttccgcc aaatacacaa ctactactac cccctctctc tctctccgtt ctccttttct
61 cctccacggc agttttatat aaaattcgca gctttcaaaa gcaaaccaaa acggcaaagt
121 ttgaactttg aactctcctc ctccccgcac cgccgcatcc ctttctttcc cccacccctt
181 cccgctacga caaaccatag catatcctcg tctcaacact ctcctctgcc tgatcaaaaa
241 agaaaatcaa atgcggtgag atctgcgggg tcgtgatcct caaaccattt ggctctggta
301 actgcaactg caaaacggca cagccatgga gcagtacgag gtactggagc agatcggcaa
361 aggagcattt ggttctgccc tgcttgtcag gcacaaggtg gagaagaaga agtatgtgtt
421 gaaaaagatc cggcttgcca ggcagacaga ccgcactcgc aggtctgctc accaggagat
481 gcagctcatt gccacagtga ggaacccatt catcgtggag tacaaggatt catgggtgga
541 gaagggttgc tatgtttgca tcattatagg atactgtgaa ggaggagaca tggctgaagc
601 tattaaaaga gctacaggtg atcatttctc tgaggagaag ctttgcaagt ggcttgtgca
661 gctcctcatg gcccttgact atttgcatgc aaatcacatt cttcaccgtg atgtgaagtg
721 ctcaaacatt tttcttacta gggatcaaag tataagacta ggtgactttg ggcttgcaaa
781 aatattgacc tctgatgatc tagcatcctc tgtggtagga acaccaagtt atatgtgccc
841 agaactactt gctgatatac cttatggtac caaatctgat atttggtcac taggatgttg
901 tatatatgaa atgactgctc tgaggcctgc atttaaagct tttgatatgc aagctcttat
961 cagtaagatc accaagtcaa ttgtgtcgcc attgccaact agatattctg gtgcatttag
1021 gggacttatt aagagcatgc tacgaaaaag tccagaacac aggccaagtg cagctgaact
1081 actcaagcat ccacatctcc aaccctatgt gctgcaagtc catttgaaat cttctcctgc
1141 tcgcaacata attccttccc atcagtctcc gattgacaag gttaagaaaa tgacatttcc
1201 cactgagtcc atgtgcagaa gcaagggcag gagaaactct ttgggtaatg agagaatcgt
1261 gaccttcagc aaaccttctc ctgaaaggaa gtttactagt tctattcaga gtatcaagga
1321 ttactcaact actcggagtg tcaaagattt atctatcgat gttagtttgg tcgaggaggt
1381 tagtagtaaa acaactttta ccacaagaac atcgagtatt gtgaagactc ccaagagaac
1441 tccaagcaaa acaatcacaa ctccccagtt agaacctcca aaggtatctt acaacagagt
1501 aaatcggagc gagctgcttt caagaacacc ggtgaacaga agcgctcggg taatccgcag
1561 agcttccctc ccactcccac tgccatcatc cgagacaccg aagcgcggcg tcagcagcat
1621 cagcatcctc gagcagctgg aatcccccga cgtatccgtg aattcgcctc ggatagaccg
1681 gatcgccgag ttcccgctgg cctcatccga agatccaccg ttcctcaagc tccacggacg
1741 ccgctctcca actccaacgc cacagcattg cgtcatcgac cagtcgatca ccaaggacaa
1801 atgcatggtc gaagcgttcc acatcatcga cgtcgatgac gacgacggga ggagcgactc
1861 gtcgtcgggc cgtaacaacg ccgcggcggc tgcctcgagc cgcgccggct cgtcggagtc
1921 gacgaggcag cggcggttcg acacgtcgtc gtaccagcag cgcgcggagg cgctggaggg
1981 gctgctggag ttcagcgcgc agctgctgca gcaggagagg tacgacgagc tgggcgtcct
2041 gctcaagcca ttcggcccgg agaaggtgtc cccgagggag acggccatct ggctcaccaa
2101 gagcttcaag gagacagggc tgtaagcata tgcgatcact ctcaccttgc tctagaaaac
2161 aaatgagcag aagcaaatta aattgtagct caggaaagat tagttgctga cagtgtgaca
2221 ccatctcagt gttgcctccc ccaactagct tatgaaagat tattcagtga tcatctatgg
2281 attaacaagg aagtagcggc
//