LOCUS AK073795 1915 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033068D06, full insert
sequence.
ACCESSION AK073795
VERSION AK073795.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1915)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1915
/clone="J033068D06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 311..1564
/db_xref="Osa1:LOC_Os04g55940"
/note="(Rice Genome Annotation Project) vacuolar
cation/proton exchanger 3, putative, expressed"
/note="mapping to R04-TIGRv4S1-001140F (Chr.4: short
arm=33095632, long arm=33099970, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG93640.1"
/translation="MENPQIEMGAFKANGPQLQNGGLRSSMVQSWNLQRFVESALRSI
RIVIFTSKLNLLLPFGPASIILHYTTSRHGLVFLFSMLGITPLAERLGYATEQLAIYT
GPTVGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFFAGGI
VHRNKDQVFSKATAVVNSGLLLMAVMGLMFPAVLHFTHSEVRQGASEVSLSRFSSCIM
LVAYASYLYFQLSGRNNAYSPIGSEEMPNEDAAEEDEESEIGMWESIAWLAMLTLWVS
ILSEYLVNAIEGASDSLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAI
GSSTQISMFVIPFCVVIGWMMGQKMDLNFQLFETATLFITVLVVAFMLQDGVANYLKG
LMLILCYLIVAASFFVHVDPQSSDD"
BASE COUNT 476 a 410 c 511 g 518 t
ORIGIN
1 gaggagtcgc caagacgtcg taggcaacac ctcccttccc ccctaccctt gaaccgaggc
61 cgagtcgtgg tcgccgcgag tggaaggcaa caactctcca aggcaggcac aggcagcagc
121 agcaggagga gaggaggcag gcgcgggcgg cgtgagcagc agcggcagcg ccgcattaca
181 gccttgggag taggaggagg aggaggcagc ggatgatgat ccctagggaa ggggcggtgc
241 cggagcccgc ggcggcgtcc tgatccccga ccgacgatcg cggctgctgc tgttgctatt
301 ttttcagagg atggagaatc ctcagattga gatgggggcc ttcaaggcga acggtccgca
361 attgcagaat ggtgggctac gttccagcat ggttcagtcc tggaacctgc agagattcgt
421 tgagagcgcg ctgcggagca tcaggattgt catattcact tctaagctca atctgctctt
481 gccgtttggg cctgcgtcga tcattctaca ctatactacc agcagacatg gattggtctt
541 cctattcagc atgctaggaa taacaccttt agctgagcgc ttgggttatg caactgagca
601 gctcgcaata tacactggtc caacagttgg ggggcttcta aatgctacgt tcggaaatgc
661 aactgaaatg atcatagcaa tatatgcttt gaaaaatgga atgatccgag tagttcaaca
721 atcattgctt ggttccatat tatcaaatat gttgttggtt atgggctgtg ctttctttgc
781 tggcggtatt gttcatcgga acaaggacca agtcttcagc aaggcaactg cagttgttaa
841 ctcaggttta ctgttgatgg ctgtcatggg actaatgttt cctgctgtcc ttcacttcac
901 gcattcagaa gtgaggcaag gagcatcaga ggtttctctt tcaaggttca gcagttgtat
961 tatgcttgtg gcatatgcaa gctatctcta tttccaacta agtggacgga ataatgctta
1021 tagtccaatt ggcagtgaag aaatgcccaa tgaggatgca gcagaggaag atgaagaatc
1081 agagattggc atgtgggagt ccatagcatg gctcgcgatg ttgacattat gggtgtctat
1141 tctttctgaa tacctggtta atgccattga gggggcatct gattcactga acctacccgt
1201 ggcttttatc agtgttattt tgcttcctat tgtgggaaac gctgctgaac atgctagtgc
1261 aataatgttt gccatgaaag ataaacttga cataacactg ggtgttgcaa ttgggtcatc
1321 aacgcagata tcaatgtttg tgattccatt ttgtgttgtc attggttgga tgatggggca
1381 aaagatggac ttgaatttcc aactattcga aacagcaacg ctcttcataa cagtactagt
1441 cgtggcattt atgctacagg atggtgttgc gaactacttg aaaggactta tgctgatctt
1501 gtgttatcta atagttgccg ccagtttctt cgttcacgtt gatccacaat ccagcgatga
1561 ttgatgccac ggacactgta attattgtac caaataccct tgaagccttt actaatctta
1621 attctggtga gttgctcctc cgtagcagag ctcagcctgc tggcaggagc tggcagaatg
1681 ttgacacggc cgggaaaatc acgtggtgtc ggttagtttg tccatgatct gcagcagcaa
1741 ttattgcacg ttgcaatagt caaaagatct gaagggcatc taggaggagg ggtggttgta
1801 atgtatacag attacagaaa caaggaaatg caatgcaatg tcgcccatgt aaaaagtctc
1861 cttgcatagt tgcattcaat taattcagtt aatgtggccc tggcccgttc tctcc
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