LOCUS AK073512 2019 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033043B10, full insert
sequence.
ACCESSION AK073512
VERSION AK073512.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2019)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2019
/clone="J033043B10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2019
/db_xref="Osa1:LOC_Os12g38760"
/db_xref="RAP-DB:Os12g0576700"
/note="(RAP Annotation release2) Similar to
Diphosphonucleotide phosphatase 1 precursor"
/note="(Rice Genome Annotation Project) nucleotide
pyrophosphatase/phosphodiesterase, putative, expressed"
/note="mapping to R12-TIGRv4S1-000723R (Chr.12: short
arm=23777070, long arm=23780816, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 533 a 436 c 505 g 545 t
ORIGIN
1 gaaggagttc ttgaagttgc taccttttac ttggtctctg aaggaggagt atgatcaggc
61 tgtgggtggt ggtcacatgg ctggttcttt gggccgcagc tgcggtgcac cccggggagc
121 agccgctgtc gaggattgcc gtcgagagga tggtccttgc cgtcaacgag tcggcacatg
181 tcagggcgtc ccctttggtt cttgggctga agggtgagac caatgaatgg gtagaggtag
241 agttcttcaa tccaaacccc tccaatactg actgggttgg agtgttttct cctgctgatt
301 ttagttctgc aatctgtgag gcttatggtg ttccacagta ttacccaatg ctctgcacag
361 cacctatcaa gtaccaatat gcaaacttca ataataatgg ttatagtaag tctgggaagg
421 gcaaactgaa gcttcagttg atcaaccaga gggaggattt ctcatttgct cttttttctg
481 gtggcctcga gaatccaaag ctggttgctg tctcaaacaa gatcgcattt gcgaatccga
541 aggcgcctgt ttacccacgt ttagctcaag ggaagtcttg gaatgaaatg acagtaactt
601 ggacaagtgg gtacgatttt aaagaagcag ttcctttcgt cgaatggggc gcgaaagggg
661 gacaacgggt cctttctcca gctggaacat taacatttga cagaaatagc atgtgtggtg
721 caccggcacg aactgtcggt tggcgccatc ctggttacat tcatacaagc tacttgaaag
781 aactgtggcc agattcactg tatacttaca gacttggcca taggttacca aatggtactc
841 acatctggag taagtcatac agcttcaaag catcacctta tcctgggcaa gattccgttc
901 agagagtagt catatttgga gacatgggaa aggcagaggc agacggttca aatgagttca
961 atgacttcca gccaggatca ttgaacacta cttaccagat catcagagac ctgaaaaaca
1021 ttgacatggt tgtccatatt ggggatattt gctatgcaaa tggttacttg tcgcagtggg
1081 atcagttcac tgcgcagatc gagccaattg cttcgactgt tccatacatg attggcatgg
1141 gtaatcatga gagggattgg cctggaactg gttcattcta tggaaacctt gactctggag
1201 gagaatgtgg tgttcctgct caaactgtat tctacactcc tgctgagaac cgtgcaaaat
1261 tatggtatgc gacagactat ggcatgttca ggttctgcat tgctaataca gaagaggact
1321 ggaggccagg gactgagcag tacaagttca tcgagcaatg cctatcgtcc gtcgacaggc
1381 agaagcagcc atggctcata ttccttgcgc accgagttct cgggtactca tcctgcacct
1441 tttatgaaga agagggtaca tttgaggaac cgatgggccg agaatcacta caggagcttt
1501 ggcagaagta caaggttgac ctcaccttct atggccatgt ccacaactat gaaagaacat
1561 gcccagtcta tcagaataaa tgtgttgtta gtggttcaga tcattacagt ggtcctttca
1621 ccgcgacaac acatgtggtc gttggaggtg ctggtgctgg tacctccgac tcagaattca
1681 ccacttcaaa tatcaaatgg agttactaca gggactttga ctacggtttt gtcaagctca
1741 cagctttaaa tcattcatcc ttattgtttg agtacaagaa aagcagtgac ggcaatgtgt
1801 atgatcattt cacaatctca cgtgattacc gagacatcct ggcttgttca attgacaact
1861 gtcctcggac cacactggct acctaaagca tgaacagttc tagacaggtt tacaggtaga
1921 ttgattgaca gggcctcaaa gagcaatcta gttcctgtac aaagtctttt gggactattc
1981 caataaatca taataaacac ggaattttct tgactgcgt
//