LOCUS AK073196 2157 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033024M04, full insert
sequence.
ACCESSION AK073196
VERSION AK073196.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2157)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2157
/clone="J033024M04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2157
/db_xref="Osa1:LOC_Os03g08060"
/note="(Rice Genome Annotation Project) elongation factor
1-alpha, putative, expressed"
/note="mapping to R03-TIGRv4S1-000297F (Chr.3: short
arm=4096054, long arm=4098803, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 475 a 533 c 551 g 598 t
ORIGIN
1 gagccgccgc cgccgcagcc tcctcctctc gtcttctcct tcgaggtcag cttcagatct
61 tctctcttct ccatatttgc gcttgttcat gttcgttcgt agctgcagat ctggtttagt
121 aacgtgaggt ttcggtgatt tcgagctggg gcatgttgtg ttcgcccatt ttttgtaact
181 tttttctgtg tattcatctc actgcaatga tcttcgtctg ctgttcgttg acgcgacgat
241 aaacttgatt tgtcagtgaa tcatctgcat aggttgaaaa ttatcggcag aatcggacga
301 tgaacttgat ttggtgcaga atcatttaca taagttgaaa attatcggtg gaatcactag
361 aaggattttt atctacaatc cgttcgcata gatctctttc cgtgtttctg taattttttt
421 tattctacta ctgctgagta ggtgttatcg tctgtacccg gtttggttgg gtcgattact
481 gcgcctctgt gcaaatcatc cgccgattag ctgcgttagc acttttatag ctgcccaagt
541 ttgatctgtg agcttgcctg ctatatttat ttagagttgt aaattataca cttatctttg
601 tttctaatat ttgtttcgtt ctgtgctgca gttgttagct ccctccttat tcaaccatgg
661 gtaaggagaa gacgcacatc aacattgtgg tcattggcca cgtcgactcc ggcaagtcga
721 ccaccacggg ccatctgatc tacaagcttg gaggtatcga caagcgtgtg atcgagaggt
781 tcgagaagga agccgctgag atgaacaaga ggtccttcaa gtacgcgtgg gtgctcgaca
841 agctcaaggc cgagcgtgag agaggtatca ccattgatat cgccctgtgg aagttcgaga
901 ccaccaagta ctactgcacg gtcatcgatg cccctggtca ccgtgacttc atcaagaaca
961 tgatcacggg tacctcccag gctgactgtg ccgtgctcat cattgactcc accactggtg
1021 gttttgaggc tggtatctcc aaggatggcc agacccgtga gcacgctctt cttgctttca
1081 ctcttggagt gaagcagatg atctgctgct gcaacaagat ggatgccacc actcccaagt
1141 actccaaggc ccgttatgat gaaatcgtga aggaagtctc atcctacctg aagaaggtcg
1201 gctacaaccc tgacaagatt ccctttgttc ccatctctgg gtttgagggt gacaacatga
1261 ttgagaggtc caccaacctt gactggtaca agggccccac cttgcttgag gctcttgacc
1321 agatcaacga gcccaagagg ccatcagaca agcccctacg tcttcccctt caggacgtgt
1381 acaagatcgg cggtattggt accgtgcctg tgggtcgtgt tgagactggt gtcctcaagc
1441 ctggtatggt ggtgaccttt ggtcccagcg gtctgaccac tgaggtcaag tcggttgaga
1501 tgcaccacga ggctctccag gaggctcttc ctggtgacaa cgttgggttc aacgtgaaga
1561 acgttgccgt gaaggatctg aagcgtgggt acgtggcctc taactccaag gatgaccctg
1621 ccaaggaggc tgccagcttc acctcccagg tgatcatcat gaaccaccct gggcagatcg
1681 gcaatggcta cgccccagtg ctggactgcc acacctcaca cattgccgtc aagtttgctg
1741 agctggtgac caagatcgac agacgatccg gcaaggagct ggagaaggag cccaagttcc
1801 tcaagaacgg tgatgctggt atggttaaga tgattcccac caagcccatg gttgtggaga
1861 ccttctctga gtaccctcct cttggtcgtt ttgccgtgcg tgacatgagg caaacggtgg
1921 ctgttggcgt catcaagaac gtggagaaga aggacccaac cggtgccaag gtgaccaagg
1981 ctgccgccaa gaagaaatga gcatcgttga agtggtggtt atgctggctg catttgagat
2041 atcttagcgt tcgttaagtt ttgcccacag ccatggcact cgttgcatgg accgttaata
2101 tctgctcgca atgtgcacta tgttagtcgt ttaaaactcg tttatttcta ttcggtt
//