LOCUS AK072591 2346 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023133N22, full insert
sequence.
ACCESSION AK072591
VERSION AK072591.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2346)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2346
/clone="J023133N22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2346
/db_xref="Osa1:LOC_Os06g44030"
/db_xref="RAP-DB:Os06g0649500"
/note="(RAP Annotation release2) WD40-like domain
containing protein"
/note="(Rice Genome Annotation Project) transcription
initiation factor TFIID subunit 5, putative, expressed"
/note="mapping to R06-TIGRv4S1-000892F (Chr.6: short
arm=26528308, long arm=26537024, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 632 a 502 c 556 g 656 t
ORIGIN
1 ggtctcgctg ctctgagtcg cgtcgcgtct ccctcccgcg cgacggatcc gagagcccta
61 aaccctagaa ctccctcgcc ctcgcgtcgg cgccatggag gacgaggaga tggagaagaa
121 ggtgcagcag tacctgcagc ggaaggggtt ccgcctcacc gagctcgcgt tgcaggagga
181 gcgcaaccgc atctccacct cctccgtctc cgacgtcgcg ctcgccaggt cggaaaatga
241 tccggcaaga tactatgatg gttatagtaa actaagaaca tgggcataca gttctctcga
301 tcagtacaag catgaattac tccgtgtcct ttacccagtg tttatccatt ccttcatgga
361 tctagtggca gagggacata cacaggaagc tcggtccttt ttccacacgt tccatgaaga
421 ccatgaactg atgcattcta gggatctcca gaaactggaa ggcattcttt ctccttcaca
481 tttggaggaa atggaactgg ccagatcttt aaggaaaaat caattcagaa ttaagttatg
541 tgagtattca tatgagttac tcctccagta tctccagaaa acacaagctc ttgtggttct
601 tggaataata aatgaacgca caacttttga cgtatcccct ggtcagccat ctttaatctc
661 tgatgacacg gatgttgttg ctctagttgg aacaaagaag gatttggcaa aacaaataaa
721 tctgaaggag gtgcattggg ggttgcttga agattcagtt gaagagcgca tggagaaaac
781 acttttagaa tcagataaaa ctgaagcaga aagcaaggat gcagatgccg aagataacaa
841 taagagaaaa tcttcggaag gtggaaagca gggaggttct gttaaaaagg tcaaaaaaga
901 taagattgca ggagccacag ggagaaccaa taaatctgaa acaagcatag tttcggtggc
961 acctcgtgtg aaaccagagc ttacacttcc agtgattcct gttgaagtcg agcagtcaat
1021 tcttgaggat ttgcgaaacc gtgcacagtt gaatagcctg gcattgccat ctgttagctt
1081 ctacacattc cttaatactc ataatgggct aaattgctca tcaatttcac atgacggctc
1141 tttggttgtg ggtggattct ctgactcatc agtgaaggtt tgggatatgt caaagattgg
1201 ccaaccgccg aaaacatcta gtccacaagg agagaatgga ctttcccagg gtgagcgcac
1261 atcagcatca gattatggaa aaagacctta tacattattc caaggtcatt ctggaccagt
1321 ttattccgct gcatttagcc cattcggaga ttttctcttg tcatcatcct cagactcaac
1381 aattcgacta tggagtacca agttgaatgc taatcttgtt tgctacaaag gacacaacta
1441 ccctgtttgg gatgtacaat ttagcccagt tggtcattat tttgctagcg cttctcatga
1501 caggactgct agaatttggt caatggataa aatccagcct ttgcggataa tggctggaca
1561 tctctctgat gttgattgtg tgcagtggca tgttaactgt aactacattg ccaccggctc
1621 tagtgacaaa actgtaagat tatgggatgt tcaaactggt gaatgtatac ggatgttcat
1681 tggccatagg agtatggttt tatcattggc tatgtctcct gatgggcgat acatggcctc
1741 cggagatgaa gatggaacca tcatgatgtg ggatctctct tctggtcggt gcgtttcacc
1801 acttggggga cacagctctt gtgtgtggtc acttgcttac agttgtgaag gggcattgct
1861 tgcatctgga tcagccgact gcactgtgaa actctgggat gttgcctcca gcacgaaggt
1921 ccttaagaca gatgatacct caactaaccg gctgaggatg ctcaaaactc tccgtacaaa
1981 atcaactcct gtttatactc tgcggttttc tcggcgaaat cttttatttg cggctggtgc
2041 tctctcactt ggctcctaag cttctgtatg ttctgtagaa tacaactacc aaacattctt
2101 tcagttttat ctcaagtgaa gttagtgcct agtgagtagt gagcctgctt ttaaggttaa
2161 tctgtagcac gcgcgtattg taattcgttc caatgtttgt tgtcttgtga ctttgtaagt
2221 tgtaacaatc gccttattta aatcatgtaa ttctttttct ggcggtgaaa aaccaaaagg
2281 aggtgatggg tactgctgga aggaagaatt ataaagaggt aaacaacgtg gctaattttt
2341 tttgtc
//