LOCUS AK072285 1653 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023016F09, full insert sequence. ACCESSION AK072285 VERSION AK072285.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1653) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1653 /clone="J023016F09" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1653 /db_xref="Osa1:LOC_Os03g08060" /note="(Rice Genome Annotation Project) elongation factor 1-alpha, putative, expressed" /note="mapping to R03-TIGRv4S1-000297F (Chr.3: short arm=4096042, long arm=4098872, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 370 a 441 c 447 g 395 t ORIGIN 1 gaccgtctca tcccagccgc cgccgccgca gcctcctcct ctcgtcttct ccttcgagtt 61 gttagctccc tccttattca accgtgggta aggagaagac gcacatcaac attgtggtca 121 ttggccacgt cgactccggc aagtcgacca ccacgggcca tctgatctac aagcttggag 181 gtatcgacaa gcgtgtgatc gagaggttcg agaaggaagc cgctgagatg aacaagaggt 241 ccttcaagta cgcgtgggtg ctcgacaagc tcaaggccga gcgtgagaga ggtatcacca 301 ttgatatcgc cctgtggaag ttcgagacca ccaagtacta ctgcacggtc atcgatgccc 361 ctggtcaccg tgacttcatc aagaacatga tcacgggtac ctcccaggct gactgtgccg 421 tgctcatcat tgactccacc actggtggtt ttgaggctgg tatctccaag gatggccaga 481 cccgtgagca cgctcttctt gctttcactc ttggagtgaa gcagatgatc tgctgctgca 541 acaagatgga tgccaccact cccaagtact ccaaggcccg ttatgatgaa atcgtgaagg 601 aagtctcatc ctacctgaag aaggtcggct acaaccctga caagattccc tttgttccca 661 tctctgggtt tgagggtgac aacatgattg agaggtccac caaccttgac tggtacaagg 721 gccccacctt gcttgaggct cttgaccaga tcaacgagcc caagaggcca tcagacaagc 781 ccctacgtct tccccttcag gacgtgtaca agatcggcgg tattggtacc gtgcctgtgg 841 gtcgtgttga gactggtgtc ctcaagcctg gtatggtggt gacctttggt cccagcggtc 901 tgaccactga ggtcaagtcg gttgagatgc accacgaggc tctccaggag gctcttcctg 961 gtgacaacgt tgggttcaac gtgaagaacg ttgccgtgaa ggatctgaag cgtgggtacg 1021 tggcctctaa ctccaaggat gaccctgcca aggaggctgc cagcttcacc tcccaggtga 1081 tcatcatgaa ccaccctggg cagatcggca atggctacgc cccagtgctg gactgccaca 1141 cctcacacat tgccgtcaag tttgctgagc tggtgaccaa gatcgacaga cgatccggca 1201 aggagctgga gaaggagccc aagttcctca agaacggtga tgctggtatg gttaagatga 1261 ttcccaccaa gcccatggtt gtggagacct tctctgagta ccctcctctt ggtcgttttg 1321 ccgtgcgtga catgaggcaa acggtggctg ttggcgtcat caagaacgtg gagaagaagg 1381 acccaaccgg tgccaaggtg accaaggctg ccgccaagaa gaaatgagca tcgttgaagt 1441 ggtggttatg ctggctgcat ttgagatatc ttagcgttcg ttaagttttg cccacggcca 1501 tggcactcgt tgcatggacc gttaatatct gctcgcaatg tgcactatgt tagtcgttta 1561 aaactcgttt atttctattc ggttaaaaac ttggatgctc tgagtcttat tgttgccctt 1621 cggttgttgt ggaatgcgag tacttacagt gct //