LOCUS AK072223 2153 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013166F20, full insert sequence. ACCESSION AK072223 VERSION AK072223.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2153) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2153 /clone="J013166F20" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2153 /db_xref="Osa1:LOC_Os06g45910" /db_xref="RAP-DB:Os06g0670500" /note="(RAP Annotation release2) Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase" /note="(Rice Genome Annotation Project) peptidyl-prolyl cis-trans isomerase-like 4, putative, expressed" /note="mapping to R06-TIGRv4S1-000941F (Chr.6: short arm=27791516, long arm=27797512, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 643 a 428 c 581 g 501 t ORIGIN 1 gataaaaaac aaaaaagaaa aaaaatagaa acacctcgtc ggcgtttaga aaggcggttg 61 gggttcggcg gcggcggcgg aggccggtga gtatccgcgg ccgcgcgaac cagtcgcctg 121 agctcccaga agcatccggc gctgcggctc ctccgtgatt tgtgtatttt tccccttgaa 181 tcccgcgccg tcgcggccgc cgtgtgctct tgccgccggc gagaaggggg gaaaacgccc 241 gcggagatgt cggtcctcat cgtgaccagc gtgggggaca tcgaggtgga cctccacacc 301 gacatgtgcc ccctcaccac caagaacttc ctcaagctct gcaagatgaa gtattacaat 361 gggtgcctgt tccacaaggt ggagaaggat ttcttggcac aaactgggga cccaactgga 421 acaggagctg gaggcgattc tgtatacaag ttcctttatg gtgatcaagc tcgatttttt 481 gatgatgaga tccgaccaga ccttaggcat tcaaaaaagg gaactattgc tatggcgagt 541 gctggtgaaa attgcaatgc ctcgcagttc tatatcacct tgcgggatga cgtagactac 601 cttgatgata aacacacagt gttcggcatg gttgctgaag gctttgacac gctgacaaag 661 attagtgaaa catatgttga tgataaaggg agaccattta aggacatcag gattaaacat 721 acgtatgtct tggatgatcc ttttgacgat cctcctcagc tcagtgaact tattcctgag 781 aattctcctg tagggaaacc acaggatgag attgcagaag agcgcttaga ggatagctgg 841 gtccctatgg atgaaatggt ggctcctgaa gaacttgagg agatgatccg ctccaaagaa 901 gcacatacaa atgctgtgat tcttgagagc gtgggagata ttccagatgc tgagatcaaa 961 ccaccagaca acgttttatt tgtttgtaaa ctcaacccag taacacaaga tgaagattta 1021 tatacaattt tttctcgttt tggaactgtg acatcagctg aaataatccg tggttacaag 1081 actggtgata gcttatgcta tgcttttatt gaatttgaga caaaggaggc ttgtgagcgg 1141 gcactcttca agatggacaa ttgtttgatt gatgatcgaa gaatacatgt tgactttagt 1201 caaagtgttt caaaactgtg gggtcagttc agacaaagca aaagaaatgc aaataaagat 1261 ggatgcttca agtgtggcgc ccctgatcac atagccaaag actgtgacca gggcactgag 1321 cagaaaaaca aaggcccaag ttatgtcctg aaagatgaaa acactcagcg tggtggaaat 1381 aaccgtcgaa gctatgatct tgtctttgat gaagatggtg aaaattatac tgatcagcaa 1441 gatcctggaa gtactggccg aagaaagatt caaagaacag atgatcgcaa atcagggctg 1501 ccacctcggg gtgaccatga caggattagc cgggagagaa ctcacagtga tgagaatggt 1561 agagaaggtg gtaaagaagg tgatagggac cgagggattc gtaagcacga ggactaccac 1621 cgttacaata aatctggtga acggagctct agtagatacg atgatcgtgg ctacagcaag 1681 cacgagagca ggggcaaata tagggatggc aatgatgatt acagacgaca accgggaggt 1741 ggcagtcgat atggcaggga taagtatgaa ggtgaacggc gctacagaga agatgatggc 1801 catggaagga gtgaccgtca caagagagat gaaagtgata acaggaaaag aagcccagat 1861 actggtaagc atagaagaga agacggtggt caccgtgaga caagcaagca cagggaaagg 1921 aggcagagag atgatagata ggtcactgca tcaccgtcag ttttgtcttg cctgtttctc 1981 atcatacatt gaattttgtc attcttaatc caaagatagc accagaacac taaacatgta 2041 gcttagaatc tgcgtgtaga cattatgaga gctccactgg ctacagattg ttgtaacttg 2101 tagacctttt cttttctata catgctcatg gacgttgttc tttttggggg acg //