LOCUS AK071963 1768 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013078M18, full insert
sequence.
ACCESSION AK071963
VERSION AK071963.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1768)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1768
/clone="J013078M18"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1768
/db_xref="Osa1:LOC_Os03g24930"
/note="(Rice Genome Annotation Project) protein kinase
APK1A, chloroplast precursor, putative, expressed"
/note="mapping to R03-TIGRv4S1-000849F (Chr.3: short
arm=14185906, long arm=14187964, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 279 a 584 c 570 g 335 t
ORIGIN
1 gagctcgccc tcctcccgcc ccccacctgc tcgatctcca ctccgtctcc atctccatcc
61 gatccaagat gccgccgagg cagtggaggc cgatgctggc gtcggcgacc aagtgctgcg
121 cggcggagga cgcggtggtg gcggtggatg gcagcggcgg cgggggcggc ctcgcgcggt
181 gcaggccggc gcggtccgag ttctcacgga ggctggcgtc gttccggaag ctgtcgtcga
241 tgaccaacag cccagcgtcg tccgtcgcgg gggcggcgga gggggggaaa gacgacggcg
301 aggagggggg cggcggcggt ggcggcgtgt ccggcccgct gcagctctac tccttcagct
361 tctccgagct ccggtccatc acgcacgact tctccagcag ctacctgctc ggggagggcg
421 gcttcggcgc cgtccacaag ggcttcgtcg acgccggcat gcgccccggc ctcctgcccc
481 agcccgtcgc cgtcaagcag ctcgacatcg ccggcctcca gggccaccgg gagtggctgg
541 cggaggtgat cttcttgggg cagttccggc acccgcacct ggtgaagctg ctgggctact
601 gctgcgagga cgaggagcgc ctcctcgtct acgagttcat gccgcgcggc agcctcgaga
661 accacctctt caagaggata tcggcgacgg tgccgtgggg cacgcgtctg aagatcgcca
721 tcggcgccgc caagggcctc gccttcctcc acggcgcctc cacccccgtc atctaccgcg
781 acttcaaggc ctccaacatc ctcctcgact cggagttcac ggcgaagctg tcggacttcg
841 ggctggcgaa gatggggccg gagggttcgg agactcacgt gacgacgcgg gtgatgggca
901 cgcacgggta cgcggcgccg gagtacgtga tgacggggca cctcaacatc aagagcgacg
961 tgtacagcta cggcgtcgtg ctcctggagc tcctgacggg gcggcgcgcc atggagcatg
1021 tcagggggag gagcctccac gccgaccagg tggtcaagat cgtcgactgg acccgcccct
1081 acctcggcag cagccgccgc ctccgctgca tcatggaccc gcgcctcgcc ggccactact
1141 ccgtcaaggc cgcccgcgcc gtcgcccacc tcgccgtcca gtgcaccagc ccgcagccgc
1201 gcgaccgccc gcgcatggcc gccgtcgtcg acgccctcga gcgcctgcag ggcttcaagg
1261 acatggccgt caccgtcggc ctctggccca ccaacgcccc cgtcgccggc aggaacgcca
1321 tctccgccaa gatccacgcc gaggtcagag gcgccggctc cggcggcggc gcggcctcgc
1381 ggcggcggag cgcctccgcc aagctgccct gatcgcccgc gtgcgttcgt gggcgcgcca
1441 cgtcatcgcg agtacgtatt tgtatacgtg tacgtgtgtg tatatacttt agctgctgta
1501 taagatggca cggccgatgt attgtacgtg gtgatcatcg agcttgattg attttttttt
1561 agccatatgg attatggatt attgcggaat taatactgat ctgtatcacc atatgtacgt
1621 acttagtagg agtatttagt tttaggtgcc atgatgctgg tagatcatgc atgcatgtat
1681 gatgaattgt actttcatcc accgattgct gattgcaagt tcgtgcatca gtaatcggtc
1741 atttcgatat tatctttttt tttccttg
//