LOCUS AK071177 1565 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023084M16, full insert
sequence.
ACCESSION AK071177
VERSION AK071177.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1565)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1565
/clone="J023084M16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 122..1258
/db_xref="Osa1:LOC_Os06g05660"
/db_xref="RAP-DB:Os06g0149400"
/note="(RAP Annotation release2) Similar to Chitinase A"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R06-TIGRv4S1-000151F (Chr.6: short
arm=2557017, long arm=2561217, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG92354.1"
/translation="MGGDKENLDLSDLNASLPAAAAALSAEDRAGLVNALKDKLQSLA
GQHTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRY
NIVNGVVEVDGGNDEPASENAAEGKDADAKGVPDFWLTAMKTNEVLSEEIQERDEPAL
KYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYHMVDEDEPILEKAIGTEIEW
YPGKNLTQKILKKKPKKGSKNAKPITKTEVCESFFNFFSPPQVPDDDEDIDEDTADEL
QGQMEHDYDIGTTIRDKIIPHAVSWFTGEAVQAEDFDDMEDDEEDDEDDDEDEEEEEE
DEDEDEDDEEEKSKPKKKSAGKPKLPSKGGAQGGADQPADCKQQ"
BASE COUNT 438 a 315 c 416 g 396 t
ORIGIN
1 atcgtggctt cccctttctc tctctctctc tctctctctc ccttcgcttt ctctcttcct
61 tcctagggct tcccctcctc ggcggcgcat cgcataggcg gcggacgaag agctcccggc
121 gatgggcggc gacaaggaga acctcgacct ctccgacctc aacgcctcgc tgcccgccgc
181 cgccgccgct ctcagcgccg aggaccgcgc cggcctcgtc aatgccctga aggataagct
241 gcagagcttg gcgggtcagc acacggacgt gcttgaggcg ctctccccca atgtcaggaa
301 gcgtgtcgaa tatttgaggg agatccaggg ccagcatgat gaaatcgagt taaaattctt
361 tgaagagaga gctgcgcttg aagcgaagta ccagaagctt tatgaaccct tgtacacaaa
421 gaggtataac atagtaaatg gagttgttga ggttgatggt ggaaatgacg aaccagccag
481 tgaaaatgct gctgagggta aagatgcaga tgctaaagga gtcccagatt tttggcttac
541 tgctatgaaa acaaatgaag tgctttctga ggagatccaa gagcgtgacg agcctgcttt
601 gaaatatctg aaagatatca agtgggctag aattgacgat cctaagggtt tcaagctgga
661 ttttttcttt gatacgaacc ctttcttcaa gaactctgtc ctaacaaaaa cgtaccacat
721 ggttgatgaa gatgaaccaa ttttggagaa agcaattggg actgaaattg agtggtatcc
781 tggtaaaaac ctgacacaga agattctaaa aaagaaaccc aagaaaggtt caaagaatgc
841 aaagcctatt accaaaactg aagtctgtga gagcttcttc aactttttca gtcccccgca
901 agtacccgat gatgatgagg acattgatga agacactgct gatgagcttc agggtcaaat
961 ggaacatgat tatgacattg ggaccaccat aagggataag atcatcccac atgctgtttc
1021 ctggtttact ggtgaggctg tgcaagccga ggattttgac gatatggagg atgatgaaga
1081 agatgatgaa gacgatgatg aagatgagga ggaggaagaa gaggatgagg atgaagacga
1141 agacgatgag gaagaaaaaa gcaagccaaa gaagaagtcg gcaggcaaac cgaagctacc
1201 atcgaagggc ggggcacaag gaggtgctga tcaaccagca gattgcaagc agcagtagaa
1261 ctgttgtggt tcacagcgcc acgtgagctg tttgttattt tgttgatgca gtattttgcg
1321 ttgaactgcc caggaaatta ttggttggtt gtgcacgggt gaggtttcgt tgctggtata
1381 tgttacccgt ggttttattg gcgaagttgt gaggcctgtc tggaacatct atattagagt
1441 attattatgt tttagttata tgtaatcggt ttattaagtt tgtgtaatta tctggaatct
1501 gccggtggaa cttttactag tattcatttg agccttatgg aaaaaaaatg aaatatgtct
1561 tatgg
//