LOCUS AK070944 2331 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023066C07, full insert
sequence.
ACCESSION AK070944
VERSION AK070944.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2331)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2331
/clone="J023066C07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2331
/db_xref="Osa1:LOC_Os09g36670"
/note="(Rice Genome Annotation Project) peptidyl-prolyl
cis-trans isomerase CYP19-4 precursor, putative,
expressed"
/note="mapping to R09-TIGRv4S1-000708F (Chr.9: short
arm=21151300, long arm=21153876, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 573 a 455 c 546 g 757 t
ORIGIN
1 ggtcatctgc ttcgtcgccg atctcgtctc cgccgcccgc gagcgaatcg cccccaaatc
61 gggagggcgg ctgctctcgc ctgcagattt gcgccgtcgt tgcggcgaat tgatgaggta
121 gaagtgtcca actactcgcc cctggttcgc gatgctgcgg aaggtggccg tcgccttcct
181 cgcttgcgcc gccctctacc tcgccttcgc cgcctactcc cgccgcgagg tatgatgggc
241 tttctcttac agttggggac ggatttgttc gattcggttg atcagtgacc taccgcgcgg
301 caattcttgg cttcgtaggt agtggcaacg gagtggaatt agactggatc tttctgttcc
361 actgttgatt tgttctacat gatgcagttg ggttttagct gctcgcacct acagttctgc
421 aatgtgatgt ctgcaattag tatgctcgtg ttgcgctgct cgagatgctt cagtagctag
481 acgatattgt ttactagtag gattgtagag aacaccatcc ccataaatcg tttaggggga
541 gacttttttc tcaccgggcc agaagggaaa gacttaaagc aaggaataca tatatatgcg
601 agttgctggc atctgactgc acaatgattt ctgttttgct gacaacagta gccttattgt
661 acaatgagtt gaacctcatg actatggcca tcactccttg tctcaagatt agaacatggt
721 gtttagattc tgaaaaatat atagacgtgg ggcgctcgtt tcattttgtg gacgatctgg
781 agataggttc tggcctcggt tatggtggta gtgactagtg agacgatgat tcaatgttac
841 agaatattta ttcttctttc tcaccttgta cagagccttg gagaggttcg attacctgca
901 gttactaaca gggtatactt ggatgtggaa attgatgggc aacatatagg tatatcacta
961 tatcatcatg acaatctgtc ttggatgttc caatggaaag aataaaactt gttgcttgca
1021 ccgttactat acatgtcact cagcttaagc cctggttaac ctaattcttg tgtgctcccc
1081 tcattacagg tagaattgtc attggccttt atggagatgt tgtgccaaaa acagttggta
1141 atcttacgcc cattcttttc ttcatcatat ttatttacaa acttgagatt aatcctttgg
1201 agacagtggc atagcagatt gtggaattct tatgttttgt ttgtgtggac aataaatctc
1261 cccttgaaga tactttgatt atcatttgta gcatatagtt tgtcccattt gtttgctact
1321 gtaatataaa ttggcaataa tagcttgttg attttttatt tctcattttg cagcaaattt
1381 tagggctctt tgtacaggta tttcttcttc ctagatctat tcctgttaca gctgaaattc
1441 aaccttctgt tcacatgatt atccatattg cactctgttc actattgcag gagaagaggg
1501 cattgggcac aagggtaaat ctcttcacta taaaggatca agatttcatc gtattatccc
1561 aggcttcatg attcagggtg gggacatagt tagaggtgat ggaaaaggaa gtgagtctat
1621 atatgggggc accttcccag atgagaattt catagtaaaa catacacatc caggtgttat
1681 tgccatggca aattctggac ctgattccaa tggatcgcag ttttacatta ccacaatcaa
1741 gacaagctgg ttggatgggg agcatgttgt gtttggcagg gtgattcagg gaatggatta
1801 tgtgtacgcc attgaagggg gtgctggaac ttacaatggc aagcctagga agaaagttgt
1861 aatcaccgac tctggtgaga taccgaagga gaaatgggct gaagaagtgt aggctgtttt
1921 gtactttggt ttgccctgta ctttttgggc agcaggtgca gttttacatt accacaaatc
1981 aggcaaggcg tctaaaatgt tgtacattgt agttagttca tactcaatcg aatcccactt
2041 gctgacactg attactcagt gaattctgca ctgtgatgaa gatgaacaca catattctca
2101 gtttctcatg atggtttagc aaggtagaac tgtcttttgt aatgcttcat ttttttaagg
2161 caatctgcaa tgctttgttt ggtattgcag tggtttataa ctatccctgt aaatttctat
2221 ttttgatgaa aatagttagt gctgttattt ttgggaacta attacaatgc acaatactgg
2281 ttggcctact cggatcaatt tatgaaaata tgcacgtgta tgttgttgtc g
//