LOCUS AK070884 2321 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023068M15, full insert
sequence.
ACCESSION AK070884
VERSION AK070884.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2321)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2321
/clone="J023068M15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2321
/db_xref="Osa1:LOC_Os11g07440"
/db_xref="RAP-DB:Os11g0175400"
/note="(RAP Annotation release2) Plant neutral invertase
family protein"
/note="(Rice Genome Annotation Project) neutral/alkaline
invertase, putative, expressed"
/note="mapping to R11-TIGRv4S1-000186R (Chr.11: short
arm=3735531, long arm=3739424, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 567 a 546 c 598 g 610 t
ORIGIN
1 gggatagtct cctccctcca ccaccaccac ctccttccac gatccctccc cctcttgatc
61 ccatccgccg ccggaggaga tcttgccgtt cttgcgcttg gatctagacc gcaagatcgg
121 tgaacggcga cgctctcatt ggttggttta ttagttggct ggtttctctc tcctcgtcga
181 ttcttctccg gcgaacacgc cgccgccgcc gcttcggatt caaggatctt gcattgcctg
241 tctttccaat ttcacattgg atttactcga actgattcgt gctgaaacaa atttgaccaa
301 gaaaagaaga ggaggtcatc agcaggatga agagggtgtc gtcccacgtc tccatcgcct
361 cggaggcgga gatcaacctc gatctctcgc ggctcctcat cgacaagccg aggctgacgc
421 tggagaggaa gaggtccttc gacgagcagt cgtggagtga gctctcccac cgccagaacg
481 acggcttcga cagcatcatg cactccccgg cgttcccctc gggcttcgac tcgcccttct
541 cgctggggac gctcggtgat ccccacccgc tcgtgaacga ggcgtgggag gctctcagga
601 agtccgtggt gtacttccgg gggcagccgg ttgggacgat tgccgccgtc gaccatgcgt
661 ccgaggaggt gctcaattat gatcaggttt ttgtgcgaga tttttttcca agtgcattgg
721 cttttctaat gaataatgag actgatatag tgaaaaactt cctcttgaaa acactccacc
781 tgcaaagctc ggagaaaatg gtagaccgtt tcaagcttgg agcaggagcg atgcctgcaa
841 gtttcaaggt ggatcgtaat cggaacagaa acactgaaac tttagttgca gattttggtg
901 agagtgcaat tgggagggtg gctccagtgg actctggatt ttggtggatt attctactcc
961 gggcatatac aaagtatacg gcagatacta gtttggcaga atcaccagag tgtcagaact
1021 gcatgaggct gatactgaac ctatgcttat ctgagggatt tgataccttc ccaactctgc
1081 tctgcacaga tggctgctca atgatggatc gtcgaatggg tatatatggt tatcctattg
1141 agatccaagc tctattctac atggcgttga gatgtgctct gcagatgctt aagccagatg
1201 gtgaagggaa ggatttcata gaaaagatag ggcaacggct acatgctcta acctaccaca
1261 tgaggaatta cttctggcta gatttcccac acctgaataa catatacaga tataaaacag
1321 aggagtattc acacactgct gtgaacaaat tcaatgtcat cccggattca atccctgact
1381 gggtgtttga tttcatgcca tgccggggag gctacttcct tggcaacgtg agcccagcta
1441 tgatggactt tcggtggttt gcccttggaa attgcattgc cattatatca tctctggcta
1501 ctccagagca atcagtggca ataatggatc tgattgagga gcggtgggaa gagctagttg
1561 gtgagatgcc tctgaagata tgttaccctg caattgagaa ccatgaatgg agaataatca
1621 ctggctgcga cccgaagaac acccggtgga gttatcacaa tggaggatca tggccagttc
1681 tcctgtggct gctgacagca gcctgcatca agactgggcg tccgcagatg gcgaagcgcg
1741 ccattgagct cgccgagtcc aggctactga aggacggctg gccagagtac tacgatggca
1801 agctgggacg gttcatcggc aagcaggcca ggaagttcca gacatggtcc atcgctggct
1861 acctcgtagc ccgtatgatg ctggaggacc cgtcgacgct gatgatgatc tccatggagg
1921 aagaccggcc ggtgaagccg accatgcgac ggtcagcatc atggaatgcc tgaaatgttt
1981 tgatagaatt tttttttccc aaagagaggt tcaatgtgga aacttatagg agttttgtcc
2041 aaacatgaaa atggggttca aaatttactg taactgtact gtcagttagg acagaagtgt
2101 atacgataga tccaagtcgt ttcagagcaa ttttgtccaa cttttcgtat ctggcttcat
2161 caatccaaca gagaagaagt ttttgttggt gaaacatttt tgcaataatt aaacagtttt
2221 gtcttgacat atatactagc atatgtttct gtgatggata attctttgta atactttgta
2281 ggactttctg ttaatatact cctcacatat tttcattgtg g
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