LOCUS AK070682 1913 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023062B02, full insert
sequence.
ACCESSION AK070682
VERSION AK070682.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1913)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1913
/clone="J023062B02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 247..1368
/db_xref="Osa1:LOC_Os09g38130"
/db_xref="RAP-DB:Os09g0554300"
/note="(RAP Annotation release2) Auxin Efflux Carrier
family protein"
/note="(Rice Genome Annotation Project) auxin Efflux
Carrier family protein, expressed"
/note="mapping to R09-TIGRv4S1-000748F (Chr.9: short
arm=21963172, long arm=21967738, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG92093.1"
/translation="MFASLAKTVTLSDVISWWFMPVNIGITFIVGGTLGWIACKILKP
PQHFRGMIIAFCSAGNLGNLLLIIVPAVCDEDGNPFGKDRSLCRSRGLSYSSLSMALG
GLFIWTHTYSLMQKAGKMYHKMQSKSIQCPADSDEEHHPAQGHDQVKLDGETAYADEE
AALLVSAKLAPEHNEENQMEAPLLTCEREIANKGGFWTNLKETVHQVVEELMAPPTVS
AILGFVVGLVPWLKSLVIGNGAPLRVIQESLQLMGNGTIPCITLILGGNLTQGLRKSV
LKRTVIITIVCIRYVIQPLIGMAVVHAAYGVGFLPHDPLYRYVLMMQFALPPAMNIGT
MAQLFDVGQEECSVIFLWTYLIAAIALTTWSTIFMSILS"
BASE COUNT 509 a 433 c 413 g 558 t
ORIGIN
1 gattacccaa cctcaagcta gctagctctc caccgtctgc gcccattcag aaaaggagag
61 tttaatccaa catcagaaaa gatgggcttc ttgtcattgc ttcttgtggc ttctatgcca
121 atcgttcagg tcctactcat aggtgttatt ggagcttttc tcgcttctgg ttacagcaaa
181 attctaacct caagcgctct aagggatatg aacaaggttg ttttcactgt cttcacacca
241 tccctgatgt ttgctagcct ggctaagacg gtcacacttt ctgacgtcat ttcttggtgg
301 tttatgccag ttaatatagg aatcacattc attgttggtg gcactctagg ctggatagca
361 tgtaaaatac tgaaaccacc acagcatttc cgaggaatga tcattgcctt ctgttcagca
421 ggaaatcttg gcaacttgct cttgatcatt gttccagcag tctgtgacga agacggcaac
481 ccgttcggaa aagaccggag cctttgccgc tctcgtgggc tctcctactc atcattatcc
541 atggctcttg gtggcttatt catatggaca catacataca gcctcatgca gaaggcaggc
601 aaaatgtacc acaagatgca gtccaaaagc atccagtgcc cggccgacag cgatgaagag
661 catcatcctg cacaaggtca tgatcaagta aaattagacg gtgaaactgc ttacgctgat
721 gaggaggcgg ctcttctggt gtcagctaaa ctggctcctg aacacaatga agagaaccaa
781 atggaagctc cacttctgac ttgcgagaga gagattgcta acaaaggagg attctggaca
841 aacctgaagg aaaccgtcca ccaggttgtc gaggagctga tggcaccacc aactgtatct
901 gcaatacttg gatttgttgt tggcctagtc ccatggttga aatctcttgt catcggcaat
961 ggcgccccac tgagagtcat ccaggagtcc ctccaactaa tgggcaatgg cacgattcct
1021 tgcatcaccc taatcctagg ggggaatctg acacaagggc tacggaagtc ggtgctgaag
1081 cgtacggtga tcatcacgat cgtctgcata cgctacgtga tccaaccctt gatcgggatg
1141 gcggttgtcc atgctgccta tggggttgga ttcttgccac acgatccatt gtaccgctac
1201 gtgctgatga tgcagttcgc gctgccacct gcaatgaaca tcggaaccat ggctcagctg
1261 tttgatgttg gtcaagagga atgctcagtg atcttcttgt ggacttacct gattgctgcc
1321 attgcactca cgacgtggtc gacgatattc atgtccatcc tgtcttgagg ttgagggtga
1381 caagaagaac caactttgtg gcaatattgg tttagctgga atgattcagc tcacggataa
1441 aatgtaaaga agccggagac aatgagcctc tccgaaagag ccgaaactga ggcttgccca
1501 tgagcaccac acgtccacac gtgtatagaa attgaagcag tattttttta gataatgaaa
1561 aatagcatgg tggcccgcgt agataactat aattttttta acatattaaa aaatattttt
1621 atttttttca gttatttcaa aattgtattt tttatatgga ctctatactc tactcccaat
1681 catcctcact ttattaaatt tctaattttg tagttcgaaa ttttgttatt tctaaattat
1741 actcttctta tatggactta atagtctatc gtcttctcta aatattcttt ttttatttga
1801 aattttactt atttctaaac tgtactccta tatggactta gactggtgta acgcacatca
1861 gtcgtggcgt tggtaggaaa tacttaacaa ttcaataaaa accctaattt tcg
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