LOCUS       AK070194                1930 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J023041H12, full insert
            sequence.
ACCESSION   AK070194
VERSION     AK070194.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1930)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1930
                     /clone="J023041H12"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             198..1496
                     /db_xref="Osa1:LOC_Os01g60230"
                     /db_xref="RAP-DB:Os01g0818000"
                     /note="(RAP Annotation release2) Auxin Efflux Carrier
                     family protein"
                     /note="(Rice Genome Annotation Project) auxin hydrogen
                     symporter, putative, expressed"
                     /note="mapping to R01-TIGRv4S1-001583F (Chr.1: short
                     arm=35161428, long arm=35166352, direction=forward) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG91821.1"
                     /translation="MMERSLMEALATAAQGGTVGTSVFDMLKYAVLPIAKVFTVCFMG
                     FLMASKYVNILQPNGRKLLNGLVFSLLLPCLIFSQLGRAITIEKMLQWWYIPVNIVVG
                     AVSGSLIGFVVASIIRPPYPYFKFTVIHIGIGNIGNIPLVLIAALCRDPTNPFGDSDK
                     CNEDGNAYISFGQWVGAIIVYTYVFKMLAPPPGESFDSAEEDILPIKASGDNVVPEKG
                     KYPTSTRTSTVPENEPLLSSEGDKNVSTSLGSKIMGIVRSMVKFLKDKQLLQPPIIAS
                     VFAIAIGVVPVLKNFVLTDDAPLFFFTDSCLILGEAMIPCILLAVGGNLVDGPGEGSN
                     RLGVRTTVAIIFARLILVPLAGVGIIVLVDKLGFIPKDDKMFKFVLLLQHSMPTSVLS
                     GAVANLRGCGKESAAILFWVHIFAVFSMAGWIILYLSLLF"
BASE COUNT          475 a          418 c          468 g          569 t
ORIGIN      
        1 gagcttaatc tcgagcgctt cgagttcgat ctctcgtgaa ggggacgacg agggcattgt
       61 ctccctcctc gcgcgcgcgg agtcgccgcc gccgccgcct cgtcctcggc cacgcggaat
      121 tgcgtgggtc ctggttgtgg aagtcaggaa gtgaagaaga agaagaagaa gtgaactagt
      181 gaagcctggg gcaagccatg atggagaggt cgctgatgga ggcgctggct acggcggcgc
      241 agggaggcac cgtggggacg tcggttttcg acatgctcaa gtacgccgtg ctgcccattg
      301 ccaaggtgtt taccgtctgt ttcatggggt tcctcatggc ctctaagtat gtcaatatcc
      361 tccagccgaa cggccgcaag cttctcaatg ggcttgtgtt ctcgcttcta cttccttgcc
      421 ttatattttc ccaactgggt agagcaatca caatcgaaaa gatgctgcaa tggtggtata
      481 ttccagtaaa tattgttgta ggtgcagtgt caggctcttt gattggcttt gtggtggctt
      541 ctatcatccg accaccttat ccatacttca agttcactgt gattcacatt ggaataggga
      601 atattggaaa tatacctctg gttctcattg cagcattatg tcgagatccc acaaatcctt
      661 ttggtgactc tgataaatgt aatgaagatg ggaatgcgta tatctcattt ggtcaatggg
      721 ttggtgcaat tattgtttac acatatgtgt tcaagatgct tgctccacca cctggtgaat
      781 cctttgatag cgctgaagaa gatattcttc caattaaggc atctggagat aatgtggtgc
      841 ctgaaaaagg gaaatatcca acaagcactc gcactagtac tgtacctgaa aatgagcctt
      901 tgttatcttc tgaaggtgat aaaaatgttt ctacttctct aggatcgaag ataatgggca
      961 ttgttagaag catggttaag ttcctaaaag acaagcagct tcttcagcca ccaattattg
     1021 cctctgtttt tgcaattgcc attggtgttg ttccagtctt gaagaatttt gtcctcactg
     1081 atgatgcacc tctgttcttc ttcacagaca gctgtctcat tctaggggaa gcaatgatcc
     1141 cttgcatttt gcttgcagtg gggggcaatc ttgtcgatgg tcctggtgaa ggaagtaaca
     1201 ggcttggtgt gcggacaacc gttgctatta tttttgcacg gctcatcttg gttcctcttg
     1261 ctggggttgg catcattgtg ttggttgata aacttggttt cattcctaaa gatgacaaaa
     1321 tgttcaagtt tgtcttgcta ctgcagcatt ctatgcccac atctgtgctg tcaggtgctg
     1381 ttgcaaacct gaggggctgt ggaaaagaat ctgctgctat cttgttctgg gtgcacatct
     1441 ttgctgtgtt ctccatggca ggatggatta ttttgtattt gagcttactc ttctaagtac
     1501 gtcataccct gatgctatac tgcacaggaa cgtccataag atcaaaatat caccagatat
     1561 accagaaaaa gatagtacca tgacatgtac attagccagt aaaccatggc gacagcctga
     1621 aggatgggtg cccgacatcc acccacgcac atacatgaat gccaaaatca aaatatttgc
     1681 ctgcaagctc atgccagcgg ttcctagtat gcatgtgggt catgtagcct taactagcat
     1741 tggtacttcc agatccagtg atatcagagt acatatgtga tctctccatg tgcttataga
     1801 tctgggaacc tgcagatctg aagttctgaa cccacagttt tcattcactt ttaatctttt
     1861 gaatctgaag gagagggaga ttcatgattc atcaccgtac caaaaaaaaa ggtgagagat
     1921 ttctatagtg
//