LOCUS AK070194 1930 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023041H12, full insert sequence. ACCESSION AK070194 VERSION AK070194.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1930) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1930 /clone="J023041H12" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 198..1496 /db_xref="Osa1:LOC_Os01g60230" /db_xref="RAP-DB:Os01g0818000" /note="(RAP Annotation release2) Auxin Efflux Carrier family protein" /note="(Rice Genome Annotation Project) auxin hydrogen symporter, putative, expressed" /note="mapping to R01-TIGRv4S1-001583F (Chr.1: short arm=35161428, long arm=35166352, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG91821.1" /translation="MMERSLMEALATAAQGGTVGTSVFDMLKYAVLPIAKVFTVCFMG FLMASKYVNILQPNGRKLLNGLVFSLLLPCLIFSQLGRAITIEKMLQWWYIPVNIVVG AVSGSLIGFVVASIIRPPYPYFKFTVIHIGIGNIGNIPLVLIAALCRDPTNPFGDSDK CNEDGNAYISFGQWVGAIIVYTYVFKMLAPPPGESFDSAEEDILPIKASGDNVVPEKG KYPTSTRTSTVPENEPLLSSEGDKNVSTSLGSKIMGIVRSMVKFLKDKQLLQPPIIAS VFAIAIGVVPVLKNFVLTDDAPLFFFTDSCLILGEAMIPCILLAVGGNLVDGPGEGSN RLGVRTTVAIIFARLILVPLAGVGIIVLVDKLGFIPKDDKMFKFVLLLQHSMPTSVLS GAVANLRGCGKESAAILFWVHIFAVFSMAGWIILYLSLLF" BASE COUNT 475 a 418 c 468 g 569 t ORIGIN 1 gagcttaatc tcgagcgctt cgagttcgat ctctcgtgaa ggggacgacg agggcattgt 61 ctccctcctc gcgcgcgcgg agtcgccgcc gccgccgcct cgtcctcggc cacgcggaat 121 tgcgtgggtc ctggttgtgg aagtcaggaa gtgaagaaga agaagaagaa gtgaactagt 181 gaagcctggg gcaagccatg atggagaggt cgctgatgga ggcgctggct acggcggcgc 241 agggaggcac cgtggggacg tcggttttcg acatgctcaa gtacgccgtg ctgcccattg 301 ccaaggtgtt taccgtctgt ttcatggggt tcctcatggc ctctaagtat gtcaatatcc 361 tccagccgaa cggccgcaag cttctcaatg ggcttgtgtt ctcgcttcta cttccttgcc 421 ttatattttc ccaactgggt agagcaatca caatcgaaaa gatgctgcaa tggtggtata 481 ttccagtaaa tattgttgta ggtgcagtgt caggctcttt gattggcttt gtggtggctt 541 ctatcatccg accaccttat ccatacttca agttcactgt gattcacatt ggaataggga 601 atattggaaa tatacctctg gttctcattg cagcattatg tcgagatccc acaaatcctt 661 ttggtgactc tgataaatgt aatgaagatg ggaatgcgta tatctcattt ggtcaatggg 721 ttggtgcaat tattgtttac acatatgtgt tcaagatgct tgctccacca cctggtgaat 781 cctttgatag cgctgaagaa gatattcttc caattaaggc atctggagat aatgtggtgc 841 ctgaaaaagg gaaatatcca acaagcactc gcactagtac tgtacctgaa aatgagcctt 901 tgttatcttc tgaaggtgat aaaaatgttt ctacttctct aggatcgaag ataatgggca 961 ttgttagaag catggttaag ttcctaaaag acaagcagct tcttcagcca ccaattattg 1021 cctctgtttt tgcaattgcc attggtgttg ttccagtctt gaagaatttt gtcctcactg 1081 atgatgcacc tctgttcttc ttcacagaca gctgtctcat tctaggggaa gcaatgatcc 1141 cttgcatttt gcttgcagtg gggggcaatc ttgtcgatgg tcctggtgaa ggaagtaaca 1201 ggcttggtgt gcggacaacc gttgctatta tttttgcacg gctcatcttg gttcctcttg 1261 ctggggttgg catcattgtg ttggttgata aacttggttt cattcctaaa gatgacaaaa 1321 tgttcaagtt tgtcttgcta ctgcagcatt ctatgcccac atctgtgctg tcaggtgctg 1381 ttgcaaacct gaggggctgt ggaaaagaat ctgctgctat cttgttctgg gtgcacatct 1441 ttgctgtgtt ctccatggca ggatggatta ttttgtattt gagcttactc ttctaagtac 1501 gtcataccct gatgctatac tgcacaggaa cgtccataag atcaaaatat caccagatat 1561 accagaaaaa gatagtacca tgacatgtac attagccagt aaaccatggc gacagcctga 1621 aggatgggtg cccgacatcc acccacgcac atacatgaat gccaaaatca aaatatttgc 1681 ctgcaagctc atgccagcgg ttcctagtat gcatgtgggt catgtagcct taactagcat 1741 tggtacttcc agatccagtg atatcagagt acatatgtga tctctccatg tgcttataga 1801 tctgggaacc tgcagatctg aagttctgaa cccacagttt tcattcactt ttaatctttt 1861 gaatctgaag gagagggaga ttcatgattc atcaccgtac caaaaaaaaa ggtgagagat 1921 ttctatagtg //