LOCUS AK069928 1998 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023036P06, full insert
sequence.
ACCESSION AK069928
VERSION AK069928.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1998)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1998
/clone="J023036P06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 178..1491
/db_xref="Osa1:LOC_Os03g27960"
/db_xref="RAP-DB:Os03g0397400"
/note="(RAP Annotation release2) Similar to Low affinity
calcium transporter CAX2 (Fragment)"
/note="(Rice Genome Annotation Project) vacuolar
cation/proton exchanger 2, putative, expressed"
/note="mapping to R03-TIGRv4S1-000930F (Chr.3: short
arm=16039945, long arm=16043851, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG91683.1"
/translation="MMGAEKAEGMEELELEEGGGSPSPSPMTAAGKMQALDFEHIGSL
AAVAESLSTGSKWRRALTSVRVVILQAKINVLLPFGPLAVMLHYLSANHQGWVFLFSL
IGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSL
LGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKASAVVNSGLLLMAVLGLMFPAVLHFT
HSEVQYGKSEVSLSRFSSCIMLVAYASYLFFQLKSQRSLYSPIGEQEEEVTEDEEEEK
EITQGEAICWLFVLTIWISILSGYLVDAIQGASESLNMPVAFISVILLPIVGNAAEHA
SAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVIGWIMGQQMDLNFQLFETATLFI
TVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPDSSNNK"
BASE COUNT 453 a 461 c 539 g 545 t
ORIGIN
1 ggttcgtcgt cgtcgtctcc ctcgccggcc gcgacgccac gcaccaattc tccgattcgt
61 cgaggagccg aggaggaatc ccagcctcga gtcgcgcccc tgatcctcca ggctccatcg
121 atccgaggag gaggggcgcg cgcgggattc cgtcgtcgga ttgggttggg ttcgcggatg
181 atgggggcgg agaaggcgga ggggatggag gagctggagc tggaggaggg cgggggctcg
241 ccgtctccgt cgccgatgac ggccgccggg aagatgcagg cgctggactt cgagcacatc
301 gggtcgctcg ccgcggtggc ggagtcgctc tcgacgggga gcaagtggcg gagggcgctc
361 accagcgtgc gcgtcgtcat cctccaggcc aagatcaacg tcctcctccc cttcggcccc
421 ctcgccgtca tgctccacta cctctccgcc aaccaccaag gatgggtttt ccttttcagc
481 ttaatcggca tcacgccctt ggctgagaga ttgggatatg cgaccgagca gcttgctctc
541 tacacgggtc cgacaattgg ggggctgttg aatgctacct ttggcaatgc gactgagatg
601 attatctcgt tgtacgcatt gaaaaacggg atgatccgtg tcgtccagca atcgctacta
661 ggctctatac tgtcaaacat gctgttggtt ctcggttgtg ctttcttcgc tgggggtctt
721 gtccatccca gcagggacca ggtcttcaac aaggcgtcag ccgttgtaaa ctcaggattg
781 cttttgatgg ctgtcttggg tctaatgttt ccagcagtac ttcactttac acattctgaa
841 gtgcagtatg gaaaatccga agtttccctt tcaaggttta gtagctgcat catgcttgtg
901 gcatatgcaa gctatctgtt ttttcaacta aagagccagc gaagtctgta cagtccaatt
961 ggtgaacagg aagaagaagt aactgaggat gaggaggaag aaaaggagat aacacagggt
1021 gaagctatct gttggctttt tgtgttgact atttggattt cgattctctc tgggtacctg
1081 gtagacgcca tacagggggc ctctgaatca ttaaacatgc cagtggcctt tattagtgtt
1141 attctgcttc caatcgtggg aaatgctgct gagcacgcaa gtgccattat gtttgccatg
1201 aaagacaaac ttgatattac acttggagtt gccataggat cgtcaacaca gatctccatg
1261 tttgtgatcc cattctgtgt ggtaattggc tggataatgg gccaacaaat ggacttgaat
1321 tttcaactgt tcgagacagc aactcttttt ataacagtac tggtggtggc atttatgttg
1381 caggaaggaa catcgaacta ttttaaaggc cttatgctta tcttatgcta tctcatagtt
1441 gctgcgagct tcttcgtaca tgttgatccc gattcaagta acaacaagtg aaagatccgc
1501 aacaatttgt ggaatgataa gggatgagca tattggaatg tcagcactag caaacagcag
1561 tatttgcaac atatcatctg tccgagtcct gatttttgac ggcctatacc tgtcagcagt
1621 atctcacacg gaggcttcaa cttccggcct ggagttgcaa gggccctgat gcggcttttt
1681 taagatagcg acggcatcgc cctttgattg agaacctgta actttattat gggatagtgt
1741 aatgtgccaa gatcactagt ctgtatttgc tgaagaaaca cttgtcgcga tttttgatga
1801 tgttgttgta ctgatgccaa tgaactggct atagcgttgc agttcaaggg acactggata
1861 actggactac atagtccata cacatttcca aacggtgcca gttgtgcaac atgatttgtc
1921 actgcacata atttatttgt ctaggatggg ttgctcgttt ttgaatgctt gcttgcttat
1981 aagagaacag gtttctag
//