LOCUS AK069854 1959 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023036P10, full insert
sequence.
ACCESSION AK069854
VERSION AK069854.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1959)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1959
/clone="J023036P10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 627..1403
/db_xref="Osa1:LOC_Os03g48970"
/db_xref="RAP-DB:Os03g0696300"
/note="(RAP Annotation release2) CCAAT-binding
transcription factor, subunit B family protein"
/note="(Rice Genome Annotation Project) nuclear
transcription factor Y subunit A-1, putative, expressed"
/note="mapping to R03-TIGRv4S1-001297F (Chr.3: short
arm=27839864, long arm=27843640, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG91638.1"
/translation="MESRPGGTNLVEPRGQGALPSGIPIQQPWWTTSAGVGAVSPAVV
APGSGAGISLSGRDGGGDDAAEESSDDSRRSGETKDGSTDQEKHHATSQMTALASDYL
TPFSQLELNQPIASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEI
SEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRF
LNTKKNEDGAPSEKAEPNKGEQNSGYRRIPPDLQLLQKET"
BASE COUNT 443 a 424 c 553 g 539 t
ORIGIN
1 gactggatcc tgattggcgt tgcggccaat caggatcctg ctggatcctg attggatcct
61 gattggcgtt gcggccgtgt ctctactgtt gttgttgttg tgtttttttt ttctttttta
121 cctttttttg ccgccttggt tttgatgcgg agtctggatg tttctacttt tggatggggt
181 ttttttacct tacccgaccg aattcgtggg tggattggat gcggttcatg gaagggaacg
241 ggatcttggt cggctactcg gatggggggt ttgccggccg gttgggattt cgggaaccgg
301 atcgaggaag aggcggagga gaattgatcc gcggcggcgg cggcggagga ggaggagaga
361 atatgtggtg attttcatct gagcccggtt gcagaagtcc aactgtatcg gagaatctta
421 ctcggttcgt actacagtcc cccacgctgg tattcaagga atcttctctg gatggaccag
481 ttcttggttg gtcccggttc tttcatgtcc agttccccat ggtggttcag ttggcagttg
541 tgccctagtt gttgtaggag taattgtcgg tggctttaaa tggttcatgc tcgtcagttc
601 ttccgagcat tccgaggtga gcgagcatgg agtcgaggcc ggggggaacc aacctcgtgg
661 agccgagggg gcagggcgcg ctgccgtccg gcataccgat ccagcagccg tggtggacga
721 cctccgccgg ggtcggggcg gtgtcgcccg ccgtcgtggc gccggggagc ggtgcgggga
781 tcagcctgtc gggcagggat ggcggcggcg acgacgcggc agaggagagc agcgatgact
841 cacgaagatc aggggagacc aaagatggaa gcactgatca agaaaagcat catgcaacat
901 cgcagatgac tgctttggca tcagactatt taacaccatt ttcacagctg gaactaaacc
961 aaccaattgc ttcggcagca taccagtacc ctgactctta ctatatgggc atggttggtc
1021 cctatggacc tcaagctatg tccgcacaga ctcatttcca gctacctgga ttaactcact
1081 ctcgtatgcc gttgcctctt gaaatatctg aggagcctgt ttatgtaaat gctaagcaat
1141 atcatggaat tttaagacgg aggcagtcac gtgcgaaggc tgaacttgag aaaaaagttg
1201 ttaaatcaag aaagccctat cttcatgagt ctcgtcatca acatgctatg cgaagggcaa
1261 gaggaacggg tggacgcttc ctgaacacaa agaaaaatga agatggtgct cccagtgaga
1321 aagccgaacc aaacaaagga gagcagaact ccgggtatcg ccggatccct cctgacttac
1381 agctcctaca gaaggaaaca tgaagtagcg gctcgaaacc tagaacagtg gcttctgtcc
1441 accggcattc actcttgagg gtggattctt gctccagaat tgtgctgcca tctttcaaat
1501 gatcttcatc gtgcaaagta attatatgta cattcctctg aatgatctat gcaccaattg
1561 ttgatcctgg cagggtaata atctggatgt attgagtcca tcacagtgcg aatgtcacgg
1621 gtagatctgc tgttttcagg caattcattc ttggctttct atcccacccg ttgttgttgc
1681 aagttaagct agcagtactt gtctcagtgt ccgtgagacg tttgtgtaag attaggttaa
1741 actagaagtt gtaatgctgt attaagtgtt tgtatttcta atatgaaccg taacaaggcc
1801 agagcagaac tcgttataca tacaaaaatt gatggccagg tcagtgttac cgtattatta
1861 tgcaatggca gaagcttgca taaggcgtgg tgccactcgt tgctttgctg tatgtttttg
1921 agtttcattc gatttatttt cactgttgag tttgtgggt
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