LOCUS       AK069848                1975 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J023034N13, full insert
            sequence.
ACCESSION   AK069848
VERSION     AK069848.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1975)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1975
                     /clone="J023034N13"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             174..1472
                     /db_xref="Osa1:LOC_Os01g60230"
                     /note="(Rice Genome Annotation Project) auxin hydrogen
                     symporter, putative, expressed"
                     /note="mapping to R01-TIGRv4S1-001583F (Chr.1: short
                     arm=35161424, long arm=35165968, direction=forward) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG91635.1"
                     /translation="MMERSLMEALATAAQGGTVGTSVFDMLKYAVLPIAKVFTVCFMG
                     FLMASKYVNILQPNGRKLLNGLVFSLLLPCLIFSQLGRAITIEKMLQWWYIPVNIVVG
                     AVSGSLIGFVVASIIRPPYPYFKFTVIHIGIGNIGNIPLVLIAALCRDPTNPFGDSDK
                     CNEDGNAYISFGQWVGAIIVYTYVFKMLAPPPGESFDSAEEDILPIKASGDNVVPEKG
                     KYPTSTRTSTVPENEPLLSSEGDKNVSTSLGSKIMGIVRSMVKFLKDKQLLQPPIIAS
                     VFAIAIGVVPVLKNFVLTDDAPLFFFTDSCLILGEAMIPCILLAVGGNLVDGPGEGSN
                     RLGVRTTVAIIFARLILVPLAGVGIIVLVDKLGFIPKDDKMFKFVLLLQHSMPTSVLS
                     GAVANLRGCGKESAAILFWVHIFAVFSMAGWIILYLSLLF"
BASE COUNT          489 a          436 c          466 g          584 t
ORIGIN      
        1 gatccgatag cttaatctcg agcgcttcga gttcgatctc tcgtgaaggg gacgacgagg
       61 gcattgtctc cctcctcgcg cgcgcggagt cgccgccgcc gccgcctcgt cctcggccac
      121 gcggaagtga agaagaagaa gaagaagtga actagtgaag cctggggcga gccatgatgg
      181 agaggtcgct gatggaggcg ctggctacgg cggcgcaggg aggcaccgtg gggacgtcgg
      241 ttttcgacat gctcaagtac gccgtgctgc ccattgccaa ggtgtttacc gtctgtttca
      301 tggggttcct catggcctct aagtatgtca atatcctcca gccgaacggc cgcaagcttc
      361 tcaatgggct tgtgttctcg cttctacttc cttgccttat attttcccaa ctgggtagag
      421 caatcacaat cgaaaagatg ctgcaatggt ggtatattcc agtaaatatt gttgtaggtg
      481 cagtgtcagg ctctttgatt ggctttgtgg tggcttctat catccgacca ccttatccat
      541 acttcaagtt cactgtgatt cacattggaa tagggaatat tggaaatata cctctggttc
      601 tcattgcagc attatgtcga gatcccacca atccttttgg tgactctgat aaatgtaatg
      661 aagatgggaa tgcgtatatc tcatttggtc aatgggttgg tgcaattatt gtttacacat
      721 atgtgttcaa gatgcttgct ccaccacctg gtgaatcctt tgatagcgct gaagaagata
      781 ttcttccaat taaggcatct ggagataatg tggtgcctga aaaagggaaa tatccaacaa
      841 gcactcgcac tagtactgta cctgaaaatg agcctttgtt atcttctgaa ggtgataaaa
      901 atgtttctac ttctctagga tcgaagataa tgggcattgt tagaagcatg gttaagttcc
      961 taaaagacaa gcagcttctt cagccaccaa ttattgcctc tgtttttgca attgccattg
     1021 gtgttgttcc agtcttgaag aattttgtcc tcactgatga tgcacctctg ttcttcttca
     1081 cagacagctg tctcattcta ggggaagcaa tgatcccttg cattttgctt gcagtggggg
     1141 gcaatcttgt cgatggtcct ggtgaaggaa gtaacaggct tggtgtgcgg acaaccgttg
     1201 ctattatttt tgcacggctc atcttggttc ctcttgctgg ggttggcatc attgtgttgg
     1261 ttgataaact tggtttcatt cctaaagatg acaaaatgtt caagtttgtc ttgctactgc
     1321 agcattctat gcccacatct gtgctgtcag gtgctgttgc aaacctgagg ggctgtggaa
     1381 aagaatctgc tgctatcttg ttctgggtgc acatctttgc tgtgttctcc atggcaggat
     1441 ggattatttt gtatttgagc ttactcttct aagtacgtca taccctgatg ctatactgca
     1501 caggaacgtc cataagatca aaatatcacc agatatacca gaaaaagata gtaccatgac
     1561 atgtacatta gccagtaaac catggcgaca gcctgaaggt acgagttgta tcagtattca
     1621 gtatagatat ggttctcctg cccagtgccc aatcgcttaa gcgccactgc tatgttaatt
     1681 ttgctaatcg ctcgctgcta caagcaactg agcaatgaga aaatgagggc atagcggtat
     1741 tgccgatgcc cagatcatca ggtcctcatg acctttaggt cggtttccta tataagcctc
     1801 tttcctttat taatgtagcc ccccccaccc cacaatgatc ttcattgaat gaactacaag
     1861 ctccaaagtg aaaatattgg ttaaaaggca agcccaaacc gaaactttga ttataaaagg
     1921 tggcccaaag catgaacttc ggttgaaact ttgattatat atcttgatta tatgg
//