LOCUS AK069701 1737 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023027B10, full insert
sequence.
ACCESSION AK069701
VERSION AK069701.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1737)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1737
/clone="J023027B10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 104..1606
/db_xref="Osa1:LOC_Os02g36070"
/db_xref="RAP-DB:Os02g0569400"
/note="(RAP Annotation release2) Cytochrome P450 family
protein"
/note="(Rice Genome Annotation Project) cytochrome P450
76C4, putative, expressed"
/note="mapping to R02-TIGRv4S1-000863F (Chr.2: short
arm=21684508, long arm=21686244, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG91560.1"
/translation="MENSQMWLLWGALSVALFFYFSTLRRRYAGGKPLPPGPTPLPLI
GNLHLVGGGTFHHKLRDLARVHGPVMTLKLGLATNVVISSREAAIEAYTKYDRHLAAR
ATPDTFRACGFADRSMVFIPSSDPQWKALRGIHASHVFTPRVLAAVRPIRERKVGDLI
AYLRAHAGEEVLVGHAMYTGILNMVSFSYFSVDIVDMGSQMARELREVVDDIILVVGK
PNVSDFYPFLRPLDLQGLRRWTTKRFNRVFSIMGDIIDRRLAHIRDNKPRHDDFLDSI
LELMAAGKIDRVNVLNMLFEAFVAGADTMALTLEWVMAELLKNPSVMAKARAELRDVL
GDKEIVEEADAARLPYLQAVLKEAMRLHPVGALLLPHFAMEDGVEVGGYAVPKGSTVL
FNAWAIMRDAAAWERPDEFVPERFVERTPQLDFRGKDVEFMPFGSGRRLCPGLPLAER
VVPFILASMLHTFEWELPGGMTAEELDVSEKFKTANVLAVPLKAVPVLIK"
BASE COUNT 327 a 545 c 539 g 326 t
ORIGIN
1 gagagcacga gcttacctag ctaggtccag agaaaaaact gatacaacga tagtaacaat
61 aacagtagat agtgtgttac tactgcacgg ttcgtcgcaa acaatggaga atagccagat
121 gtggcttctg tggggagccc tctccgtggc gctcttcttc tacttctcca ccctgcgacg
181 acgctacgcc ggcggcaagc ccctcccccc gggcccgacg ccgctgccgc tcatcggcaa
241 cctacacttg gtcggcggcg gcacgttcca ccacaagctc agggacctgg cacgcgtcca
301 cggccccgtc atgacgctca agctcggact cgccaccaac gtggtcatct cctcccggga
361 ggccgccatc gaggcgtaca ccaagtacga ccgccacctc gccgcgcgcg ccaccccgga
421 caccttccgc gcctgcggct tcgccgaccg ctccatggtg ttcatcccga gctccgaccc
481 gcagtggaag gccctgcggg ggatccacgc ctcgcacgtc ttcaccccgc gggtgctcgc
541 cgcggtgcgc cccatccgcg agaggaaggt gggcgacctc atcgcctacc tccgcgcgca
601 cgccggggag gaggtgctcg tcggccacgc catgtacacg ggcatcctca acatggtgtc
661 cttctcctac ttctccgtcg acatcgtcga catgggctcg cagatggccc gcgagctgcg
721 ggaggtggtg gacgacatca tcttggtggt cgggaagccc aacgtgtccg acttctaccc
781 gttcctccgg ccgctggacc tgcagggcct gcgccgctgg acgacgaagc ggttcaacag
841 ggtgttctcc atcatgggcg acatcatcga ccgccgtttg gctcacatcc gcgacaacaa
901 gccgaggcac gacgacttcc tcgactcaat cctcgagctc atggctgccg gcaagatcga
961 tcgtgtcaac gtgctcaaca tgttgttcga ggctttcgtt gccggggctg acaccatggc
1021 tcttaccttg gagtgggtaa tggccgagct gctcaaaaac ccgagcgtga tggccaaggc
1081 gcgcgccgag ctgagggatg tgctcggcga caaggagatc gtggaggagg ccgacgcggc
1141 gaggctgccc tacctgcagg ccgtgctgaa ggaggccatg agactgcacc cggtgggcgc
1201 gctgctgctg ccgcacttcg ccatggagga cggcgtggag gtcggcggct acgcggtgcc
1261 caagggctcc acggtgctct tcaacgcgtg ggcgatcatg cgcgacgcgg cggcgtggga
1321 gaggcccgac gagttcgtgc cggagcggtt cgtggagagg acgccgcagc tggacttcag
1381 agggaaggac gtggagttca tgccgttcgg gtccgggagg cggctgtgcc ctgggctgcc
1441 gttggccgag cgtgtcgtgc cgttcattct ggcgtcgatg ctgcacacgt tcgagtggga
1501 gctccccggc ggcatgacgg cggaggagtt ggacgtgtcc gagaagttca agactgccaa
1561 tgtccttgct gtgcctctca aggctgtgcc tgtcctgatc aaatagttgg acgactatat
1621 tattggccag atcaattacc atactcggca ccagaattat attattttta acgaatttgt
1681 actagtgcac attgaataga gaagaagcaa aactatacaa gtataagcct acacagg
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