LOCUS AK068776 1524 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013160K11, full insert
sequence.
ACCESSION AK068776
VERSION AK068776.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1524)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1524
/clone="J013160K11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 339..1037
/db_xref="Osa1:LOC_Os08g42400"
/db_xref="RAP-DB:Os08g0535800"
/note="(RAP Annotation release2) No apical meristem (NAM)
protein domain containing protein"
/note="(Rice Genome Annotation Project) NAC
domain-containing protein 68, putative, expressed"
/note="mapping to R08-TIGRv4S1-000924F (Chr.8: short
arm=26634130, long arm=26637492, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG91083.1"
/translation="MERAAAAAPVVVRHGGVVLPPGFRFHPTDEELVVQYLRRKAFGL
PLPAAVIPDLHNLFKLDPWDIPGASSDGDKYFFAVRPPAARGRRQHVTASGGCWKPAG
GRDKPVVVARCGGSHLVGVKKGMVFVPRQGRKAPAAAAAAAGGGCWVMHEYSLALPMH
KKGCLAEAEEWVVCRIFQRSSSGSRSPRRPDNDVRRTMPAVAELGRSPSPSSSSSQSS
CVTSSSDQEEVSSG"
BASE COUNT 332 a 392 c 443 g 357 t
ORIGIN
1 gaacacccaa ccccctctct ctctctatct ctctcctctc tctctctcta gctctagctc
61 tagctcgtcg ccgccatgaa cgttccaagc aaatgcatgg ctcctgcaaa gtaaaaaaag
121 aagaagaagc agcagctgca gcttctcttc agtatcgatc tttaactgta tcgagctagc
181 ttagcttagc ttagctctct gccattaact tgtgcttcac tgagcttgag ctagctagct
241 tcttggctgt gtgactgagt agctctagct cctcgtcgtc gtcgtcgtcg tcgtcgtcgt
301 cggcgtcggt ggtggtgtga attgatagaa ttgatacgat ggagagggcg gctgcggcgg
361 cgccggtggt ggtgaggcat ggaggagtgg tgttgccgcc ggggttcagg ttccacccga
421 cggacgagga gctcgtggtg cagtacctcc gccgcaaggc gttcggcctg ccgctccccg
481 ccgccgtcat ccccgacctc cacaacctct tcaagctcga tccctgggac attcctggtg
541 cgagcagcga cggggacaag tacttcttcg ccgtgcggcc acctgcggcg agggggagga
601 ggcagcatgt gacggcgagc ggtgggtgct ggaagccggc gggcgggcgg gacaagccgg
661 tggtggtggc ccggtgcggc gggagccacc tcgtcggcgt caagaagggc atggtgttcg
721 tcccacggca agggaggaag gcaccggcgg cggcggcggc ggccgccggc ggtggctgct
781 gggtcatgca cgagtacagc ctcgccctgc cgatgcacaa gaagggttgc ttggctgagg
841 ctgaagaatg ggtagtgtgc cggatatttc agaggagcag cagcggcagc cggtcgccga
901 ggaggcctga caacgacgtg aggcgaacga tgccggccgt cgccgagctc ggccggtcgc
961 cgtcgccatc gtcgtcgtcg tcgcaatcca gctgcgtcac aagcagctcc gaccaggaag
1021 aggtcagcag cggctagcta gctgaagaag aatgcaggca gcagcagcaa gcagctaagc
1081 tgcctctcaa agagaggctt gagtgttagc ctagctaagc atatatattt atagccggcc
1141 aaaccctctg aaagtgatct gcatcaatgc atgcccccct ttaatttctt cttcctcctt
1201 aattattttt tcccaaccat gtaatgtaat gtaatttaat gtaatgcagt gtaatgtaac
1261 gggaaggaag cactgaatta atcaaattaa attaacaaat gaagagtgct caaaagtcca
1321 aggaagcttc taaggttcag gagccagata ttatctactt aattaattaa ttatgggcac
1381 atatctgtag ttgctagcta gctgcatatg catctcgtcg ttgtcgatcc atttgtaact
1441 tgcaagttgt gttggtgtaa tattgtaata tttttctccg atggttgaga aattaatctg
1501 aaatccatta tagcaattaa ttgc
//