LOCUS AK068309 2223 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013149B16, full insert
sequence.
ACCESSION AK068309
VERSION AK068309.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2223)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2223
/clone="J013149B16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 43..1560
/db_xref="Osa1:LOC_Os03g55360"
/db_xref="RAP-DB:Os03g0761700"
/note="(RAP Annotation release2) Heat shock protein DnaJ
family protein"
/note="(Rice Genome Annotation Project) heat shock
protein binding protein, putative, expressed"
/note="mapping to R03-TIGRv4S1-001510F (Chr.3: short
arm=31434868, long arm=31439028, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG90855.1"
/translation="MALRAAELRRLVVLLRGEAALPLPLAWRGRPVSTAARDDELAGK
SAYEVLGVGETSSSAEIKASFHRLAKETHPDVAAAAGSSRFLQILAAYEILSDSQRRA
HYDIYLRSQKRVLQKHPRPSHHVYPNPSGSGIVVTRESNVVEWLKWYRLTIDDIVTKK
RVATGSGYFDKLESELYTAIHAAYYGPDVRSVDLLPDCFEAEERSVYETPELLHLVSG
RDLFGIVSLADRVQQLPDAFQEKQTLPGFKTYGISQHVSTNLEKGTVHASPVYIHKRE
IDKNDGPHSDAYKDIELWICGKLVATATRSPKCNCIDKSDVEDHIHVFLVPNEVASSD
FTQELPILGTITGLATTGEEGSCCVYDSRGIKTHLIVKHRTLMVKHMHWYQVGDEISP
CECRCSRARLPPSRYWLFEPRCYMHDTGGWYIETFGRDKKGRKILSPRQWDGSNEHSE
RRLHPAMYLAALAYRSLDIEDAQRKKWSITTFLELQSSHICQLCKKIFNGGKESS"
BASE COUNT 585 a 481 c 573 g 584 t
ORIGIN
1 gactccggcc ccacgcgaca gagcaacggc gggagcgaag tgatggcgct tcgggcggcg
61 gagctccggc gactcgtcgt cctcctccgc ggcgaggcgg cccttccgct ccccctcgcg
121 tggcgcggcc ggccggtgag caccgccgct cgcgacgacg agctcgccgg gaagagcgcc
181 tatgaggtgc tcggggtcgg ggagaccagc tcctccgccg agatcaaggc ctccttccac
241 cgcctcgcca aggagaccca ccccgacgtc gccgccgccg ccgggtccag ccgcttcctt
301 cagatcctcg ctgcctacga gatcctatcg gattcacaga gaagggctca ctatgatatc
361 tacctgcgat cgcagaagcg agttttgcag aagcatccta ggccatctca tcatgtatat
421 ccaaatccaa gtggttcagg cattgtagta acaagagaaa gtaatgttgt tgagtggcta
481 aaatggtata ggctcactat tgatgacata gttacaaaga agagggttgc gacagggtca
541 ggttactttg ataagcttga aagtgaactg tacacagcaa tccatgctgc atactatggt
601 ccggatgttc ggtctgtgga tctccttcct gattgctttg aagctgagga gaggtctgta
661 tatgagaccc ctgagctatt gcaccttgta tcgggtcgtg atctgtttgg tattgttagt
721 ctagctgata gagttcaaca gctgccagat gcttttcagg agaagcagac gctacctggt
781 tttaaaactt acgggattag tcagcatgtt tcaacaaact tggagaaagg cacagtacac
841 gccagtcctg tatatattca caagagagag attgacaaga atgatggtcc tcattcagat
901 gcctacaagg atattgaatt gtggatctgt gggaaattag tagctactgc aacgaggagc
961 cctaagtgca attgtattga taaatcagat gtggaagatc acatacatgt atttcttgtc
1021 ccaaatgaag tggcttcatc tgattttaca caagagcttc ctatcctggg aactattact
1081 ggcttggcca ccactgggga ggaaggatct tgctgtgtct atgatagccg tgggataaag
1141 acacatctaa ttgtcaagca cagaacatta atggtcaaac acatgcactg gtatcaagtt
1201 ggagatgaaa tttctccatg tgagtgtcga tgcagtaggg ctcggttgcc acctagtaga
1261 tattggcttt ttgagcctcg ttgttatatg catgacactg gtggctggta cattgagacc
1321 tttggaaggg acaagaaagg gaggaaaatt ctatcaccaa gacaatggga tggttccaat
1381 gaacactctg aaaggaggtt gcatccagca atgtatctgg cagctctagc ttacagatct
1441 ttggatattg aggatgctca acgaaagaaa tggagcatta cgaccttcct ggaactgcag
1501 tcatctcata tctgtcaatt gtgcaaaaaa atcttcaatg ggggaaagga aagttcatga
1561 gaacaccatg agaaatgcac agcagtttca agaatttgat ctttgacaac tctgatacta
1621 tgatgccatg ccttgttcac ccgttgatca tatccttgag attttggtgt ggctatgtag
1681 catcatggca ctgcactgga agatatatag tgcacctcta gaataagcaa aattatctga
1741 ggctgttcat tgtgctgatt gttggatgtg gcacccctgg tcaatagctt ttttgctgtg
1801 ctgatgtcag aatttccaca ccatttgcta tgaaaggaca gacattatgg cttcagccat
1861 ggccagttaa cttgaagtct gtcttatgac caacgggtgg gaatatggga gaaagttaat
1921 aattacttgg cttctcgact ggagtttaat ctacttggca tattgatttt atattaggcg
1981 agcaccctct aaatttggtg aaggtgagag atgaagcagc caccgagctt agcgtgaaca
2041 ttctaagaaa aggggaaagc actatgaaaa agcaccagca agcagcaaca gctctgcatg
2101 gagagggata ttgtattttc ttagcctctt aggtgtcgac tgagttgcgc atgctattgt
2161 gggcaagttg tttatgtttg agacaatgaa ttttgcttct atagttccac ctgatggaag
2221 act
//