LOCUS AK067270 2494 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013098O05, full insert
sequence.
ACCESSION AK067270
VERSION AK067270.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2494)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2494
/clone="J013098O05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2494
/db_xref="Osa1:LOC_Os06g05160"
/db_xref="RAP-DB:Os06g0143700"
/note="(RAP Annotation release2) Similar to Sulfate
transporter 2"
/note="(Rice Genome Annotation Project) sulfate
transporter 3.4, putative, expressed"
/note="mapping to R06-TIGRv4S1-000142R (Chr.6: short
arm=2291664, long arm=2297803, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 509 a 733 c 725 g 527 t
ORIGIN
1 gaagcagcca aggcgcctcc cttcctaatc ctacctcgat cgcctcctcc ctctcgactc
61 gatcgccatg gttgtcaaca acaaggtgga cagcctctcc tacgacgtcg aggcgccacc
121 ggcgcaggcg ccgacgaccc cggcggtggt ctccgcgccg ccgacgccgc ggggcgaggc
181 gccggcgatg acgacgacgg cggcggcgga gctgcacaag gtgtcggtgc cggagaggag
241 gtcgacggcg aaggcgctga ggcagcggct ggcggaggtg ttcttccccg acgacccgct
301 ccaccagttc aagaaccagt cgtccgcgcg gcggctggtg ctcgcgctgc agtacttctt
361 ccccatcttc cattggggct ccgactacag cctccgcctc ctccgctccg acgtcgtctc
421 cggcctcacc attgccagcc tcgccatccc gcagggaatc agctacgcca agctcgccaa
481 cctgcctcca atcattggac tatattcgag cttcgtgccg tcgctgatct actcgttgtt
541 gggtagctcg cgggatctgg ctgtagggcc ggtgtcgata gcgtcgctgg tgatggggtc
601 gatgctccgg caggcggtgt cgccggacca ggagcccatc ctctacctcc agctcgcctt
661 cacctccacc ttcttcgccg gcgtcttcca agcctccctc ggcttcctcc ggctggggtt
721 catcgtggat ttcttgtcga aggcgacgct gacgggattc atgggcggcg cggcgatcat
781 cgtgtcgctg cagcagctca agggattgct cgggatcatc catttcacgt cgcagatggg
841 gttcgtccag gtgatgcact ccgtcttcaa gcaccacgac gagtgggcgt ggcagaccat
901 cctcatgggc gtcgccttcc tcgccgtcct cctcaccaca cgccacatca gcgccaggaa
961 cccaaagctt ttctgggtgt cagcagctgc tccactgaca tcagtgatca tctctaccat
1021 catctcgttc gtcagcaaag ctcatggcat cagtgttatt ggcgatctcc ccaagggatt
1081 gaaccctcct tcagcgaata tgctgacctt cagtggctcc tacgtaggac tggccttaaa
1141 cacaggaatt atgactggca tactatctct cactgaaggg atagcagtag gcaggacatt
1201 tgcatccatc aacaactacc aggttgatgg aaacaaggag atgatggcca ttggtgtcat
1261 gaacatggct ggctcatgtg cctcctgcta tgtcaccaca ggatcgttct cgaggtcggc
1321 ggtgaactac agcgcggggt gcaagacggc ggtgtcgaac atcgtgatgg cgtcggcggt
1381 gctggtgacg ctgctgttcc tgatgccgct gttccactac acccccaacg tgatcctctc
1441 ggcgatcatc atcaccgccg tgatcggcct catcgacgtc cggggcgccg caggctgtgg
1501 aaggtcgaca agctcgactt cctcgcctgc atggccgcct tcctcggcgt cctcctcgtc
1561 tccgtccaga tgggcctcgc catcgccgtc ggcatctccc tcttcaagat cctcctccag
1621 gtcacccgcc caaacatggt ggtcaagggc gtcgtccccg gcacggcgag ctaccggagc
1681 atggcgcagt acagggaggc catgcgtgcg ccgtccttcc tcgtcgtcgg cgtcgagtcc
1741 gccatctact tcgccaactc catgtacctc ggcgagagga tcatgaggtt tctccgggag
1801 gaagacgagc gggccgccaa gtgcaaccag tgccctgtca gatgcatcat cctcgacatg
1861 agtgctgttg cagcgatcga cacgagtggc ctcgatgcac ttgcagagct gaagaaggtg
1921 ctggaaaaaa gaaacatcga gcttgtgctg gccaacccgg ttggatcggt gaccgagagg
1981 ctgtacaact cggtggtcgg caagacgttc ggctcagacc gcgtgttctt cagcgtcgcc
2041 gaggccgtcg cggcggcgcc gcacaaaaca cagccctgac aagagcagag atgtgctttg
2101 ctaccagtag atccagcaga agcagaagta ctctctgacc agcagaagca cagtagaaca
2161 aggtgcttct cggaggaggc taattaaaat taagaatctt aagatagaag cgtagaacaa
2221 gaagaagaag aagaagaaga agaagaagaa gaagaagaag aagaagaaga aggtggtaaa
2281 aaacaagtct atgggctgtt aatttgttcg cgtgttgtgt ttaattaggg gggattatgg
2341 tagtgcagat gggaaataac tccgggtgct gatctcttct gatcgagttg gaagagtttt
2401 tgaagcatgt aaccagaatg cgtggcgtgt atggtgtagc ttgtgatttg gtagttgttg
2461 caaagtaatc cttaatggaa tcgggttttg atct
//