LOCUS AK067066 2792 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013093P17, full insert
sequence.
ACCESSION AK067066
VERSION AK067066.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2792)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2792
/clone="J013093P17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 829..2256
/db_xref="Osa1:LOC_Os05g44210"
/db_xref="RAP-DB:Os05g0518600"
/note="(RAP Annotation release2) Similar to SL-TPS/P"
/note="(Rice Genome Annotation Project)
alpha,alpha-trehalose-phosphate synthase, putative,
expressed"
/note="mapping to R05-TIGRv4S1-000932F (Chr.5: short
arm=25631672, long arm=25638880, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG90249.1"
/translation="MNLVSYEYVACQGSKKGVLILSEFAGAAQSLGAGAILVNPWNIT
EVADSIKHALTMSSDEREKRHRHNYAHVTTHTAQDWAETFVCELNETVAEAQLRTRQV
PPDLPSQAAIQQYLHSKNRLLILGFNSTLTEPVESSGRRGGDQIKEMELKLHPELKGP
LRALCEDEHTTVIVLSGSDRSVLDENFGEFNMWLAAEHGMFLRPTNGEWMTTMPEHLN
MDWVDSVKNVFEYFTERTPRSHFEHRETSFVWNYKYADVEFGRLQARDMLQHLWTGPI
SNAAVDVVQGSRSVEVRSVGVTKGAAIDRILGEIVHSKSMITPIDYVLCIGHFLGKDE
DIYVFFDPEYPSESKVKPDSSGSVSLDRRPNGRPSNGRSNSRNSQSRTPKAQAAPERS
SSSSSSSQGTPNSHHDWREGSSVLDLKGENYFSCAVGRKRSNARYLLNSSEEVVSFLK
EMADATAAHNGFQSTTADYMFLDRQ"
BASE COUNT 765 a 584 c 665 g 778 t
ORIGIN
1 gttgtaccag cactacaagg aaggggatgt gatctggtgc catgattacc acctcatgtt
61 cctgcccaag tgcctcaagg atcatgacat caacatgaag gtcgggtggt tcctgcacac
121 gccattccct tcttcggaga tttaccggac gctgccctcc cggtcggagc tgcttcgctc
181 cgtgctctgt gctgatttag tcggatttca tacatatgat tatgcaagac attttgtgag
241 cgcatgtaca agaatacttg gactggaggg cactcctgag ggtgtggaag accaaggaag
301 gctaaccaga gttgctgcgt ttcctattgg gatagactct gaacgtttca agcgagcatt
361 ggagcttcca gcagtaaaaa gacacatcac tgaattaaca caacgttttg atggtcgaaa
421 ggtaatgctt ggtgttgacc gacttgacat gatcaaagga attccgcaaa agattttggc
481 ctttgaaaag tttctcgaag aaaaccatga atggaatgat aaagtggttc tacttcaaat
541 tgctgtgccg acgagaactg atgtccctga gtgtatgagc ccttcctgtg ttttatctcc
601 tatttatact ttgtgcgact ctacaagcat gtctgctgga gtacctcaga tgcatgaaat
661 caaaagctta caagtcaggt gcatgaaatt gttgggcgca taaatggccg atttggaaca
721 ctgactgctg ttcctattca tcatctggac cgatctcttg atttccatgc cttgtgtgcc
781 ctttatgcag tcactgatgt ggcccttgta acatcgctga gagatggaat gaatcttgta
841 agctatgaat atgttgcatg ccaaggatca aaaaaaggag ttttgatatt gagtgagttt
901 gctggggcag cacagtctct tggagccggt gctattttag taaacccctg gaatattact
961 gaagtcgcag actcaatcaa gcatgctttg acaatgtcat ctgatgagag agaaaagcga
1021 cataggcata actatgctca tgtgacaact cacactgcac aagattgggc cgaaactttt
1081 gtatgtgagt taaatgagac agttgctgaa gctcagctga gaacaagaca agttccacct
1141 gatctcccta gtcaagcagc aattcaacaa tatctgcatt ccaaaaatcg gttgctcata
1201 ttggggttca attcaacatt gactgagcca gttgaatcct ctgggagaag gggtggtgac
1261 caaatcaagg aaatggagct caagttgcat cctgagttga agggcccttt gagagccctc
1321 tgtgaggatg agcatactac agttattgtt cttagtggaa gtgacaggag cgtccttgat
1381 gaaaatttcg gagaattcaa tatgtggtta gcagcagagc atggcatgtt tttacgtcca
1441 actaatggag agtggatgac aacaatgcct gagcatctga acatggattg ggtagacagt
1501 gtaaagaatg tttttgaata ctttacagaa agaaccccaa ggtctcattt tgaacaccgt
1561 gagacatcat ttgtatggaa ttacaagtat gctgatgttg agtttggacg gctccaagca
1621 agagatatgc tgcagcactt gtggacaggt ccaatctcaa atgcagcagt cgatgttgtt
1681 caaggaagcc gatcagttga agttcggtct gtcggagtta caaagggtgc tgcaattgat
1741 cgtattctag gagagatagt tcatagcaaa agcatgatta ctccaattga ttatgttcta
1801 tgcattgggc acttcctagg aaaggatgag gacatctatg tctttttcga tcccgagtac
1861 ccttctgaat caaaagtaaa accagatagc agcggctcgg tatctcttga caggaggcca
1921 aatggacgac catcaaacgg caggagcaat tccagaaact cgcagtcaag gacacccaag
1981 gcacaggctg ctccggagag gtcatcgtca tcatcttcat caagccaggg caccccaaac
2041 agccaccatg actggcgcga agggtcctcg gtccttgacc tcaagggcga gaattatttc
2101 tcctgcgctg ttggaaggaa gcggtccaac gcccgctacc tgcttaactc gtcagaggag
2161 gtcgtctcct tcctcaagga gatggcagat gcaacggcgg ctcacaatgg gttccagtcc
2221 acaactgcgg attacatgtt cttggatagg cagtagatgt tctaatcccc ggtcttcccc
2281 cagagaagaa gtttaaccct gaaagtattc attccttaca tggccctgca tgatgtacaa
2341 ttgtgtacaa aatttaagct cgtgataaaa ctgcgagagg gcagcaaatg agaaagcgtt
2401 aaaatcgttt agagaattct gtacaaaatt aaatgcgctc tctgctccca tagtgctgaa
2461 atgagcccac cgctcttcta catttttttt ttggtctcgg atcccgctat tagcagttta
2521 gtgatagata ataaatctgt aaacttttgt tttcctgaat gttttcggcc ataggttctg
2581 gagcgcgtca tgtttatttt tcaaattcta gttcagggtc tagttctgag tttgtttttt
2641 tttccttgtt cgtctttaga gctagatggt gaagatggtg gtcacgatgg agaaaattac
2701 atatctacta tcgcataaga taggattcgc tcaaatacca ttattaaaat gggcttcgct
2761 ataataccat tctcaaccaa gatgtttttt ct
//