LOCUS AK066844 2272 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013088J01, full insert
sequence.
ACCESSION AK066844
VERSION AK066844.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2272)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2272
/clone="J013088J01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2272
/db_xref="Osa1:LOC_Os03g06630"
/note="(Rice Genome Annotation Project) heat shock factor
protein 1, putative, expressed"
/note="mapping to R03-TIGRv4S1-000244F (Chr.3: short
arm=3321387, long arm=3323658, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 593 a 461 c 582 g 636 t
ORIGIN
1 ggctgccaag ctcgccggat tcttttcttg gattggagca gattgggggg tgacgatgga
61 gaagatgatg ccggggatgg tgaaggagga gtggccgccg agctcgccgg aggaggggga
121 ggcgccgagg cccatggagg ggctgcacga ggtcgggccg ccgccgttcc tgaccaagac
181 gttcgacctg gtggccgacc cggccaccga cggcgtcgtc tcgtggggcc gcgcgggcag
241 cagcttcgtc gtctgggacc cccacgtctt cgccgccgtc ttcctcccac gcttcttcaa
301 gcacaacaat ttctccagct tcgtccgcca gctcaacacc tacgtgagtc cccccaattt
361 ccattgccac cactagtgtt gttccctgct tgtcttcagt tgttgggaaa ttgtgtgttc
421 tgttttcttg ttttggatgt tgttgttcag ttcttggtcc ggacgaatta cctgaacaag
481 cgatcacatt tctacagttt gagatttcag gttggattgt tagataatta aaatgggtgt
541 gttctcactt ttgtggttgc cattatgttt tgtgccacat cgtgtgtgtt gagtattgat
601 aggaatcttg acactagaat taaatggatg gagcattgta aaattttcag tgcaaattgt
661 aaacccggcg gtattggtta aataaatcgg ttgtattgtg catttttcca ctcagtgcaa
721 gaactttgtg catgcacaaa tgcacaatta tgtagcaatg gagctagaaa ctgggattta
781 cttattggtg ctgacctgtt ggttgtagaa aattacgatg gctacaattg ttcaacggac
841 tgttttgtgg acttgacatt atttgcccaa actcagctat gtccaatcct tttcagacac
901 atgcatataa accctcaatt cctgaaatgt tctcaatgat tcagaaagag gaaaaaaatc
961 tccatggacg aactactcag tttctgacat gctgttttct tcaatttgtt actgtgtagc
1021 tagatggatc aagacagcgg atgaagctac aagaatctgc ttgtttgttc tagaagactc
1081 ctttgatcac catcaaaaaa aagaaaaagt gatgtagtat actgctacct gttctcttaa
1141 taatgctatg ataaattttg tcgcaaaact atgtgaaacc aaccgtttta catactttgt
1201 gtgacttgct atcctaattg agttttgtct gtggcttctg tacttgaact aactatacct
1261 gtaatattct ttgtgtttgc aatttgcagg gtttcagaaa gattgatcct gacagatggg
1321 aattcgcgaa tgatggtttc ctgagaggcc agaggcatct tctaaagatg attaagagga
1381 ggagaccatt gtcttatctc cctggatctc agcaggcact tggcacctgc cttgaggttg
1441 gtcagttcgg attagatgaa gagatcgaca ggctaaagcg tgacaagaac atcttactcg
1501 cggaggttgt gaaactaagg cacaagcagc aaagcacgaa agccaatatg cgagccatgg
1561 aagagaggct gcaacatgcg gagcagaagc aggtccagat gatgggtttc ttggcaagag
1621 caatgcagaa ccctgacttc tttcaccagt tgattcacca gcaggataaa atgaaggggc
1681 tcgaggacac attctcgaag aagaggacga ggtcgataga catagtgcca tttctcaacc
1741 ccggggaggt cagccagggc gatcaactcg agtcgacatt gctgtttgat ccaaggccat
1801 ttgctgaact gaatgatgag cctgcaaagt ctgaactgga gaatttagca ctgaacatcc
1861 agggtcttgg gaagggcaag caggatgtca acaggactcg aaatcagcca cgaaatcagg
1921 ctagcaacga aaccgagtta accgacgact tctgggagga gcttctgaat gaaggagcaa
1981 gagatgatgc tgggattcca gggatggagc gaagaagacc tagatatgtc gatgcattag
2041 cgcagaagct gggttatcta agcaatagta gccaaaagta gatcaagtgg ctccgatttg
2101 tccaaccatt tttgtgatag ctcttattgt atatcggtgt aattgtatta tagtgatagt
2161 tttatagcga taggtccaat ttatattgcg gatccggcgt gctgtgtagt atatgtctgg
2221 tgatgtaaag ttgagccatc attcttaatg gtatatattg acaatttttt gc
//