LOCUS AK066792 2264 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013079C13, full insert sequence. ACCESSION AK066792 VERSION AK066792.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2264) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2264 /clone="J013079C13" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2264 /db_xref="Osa1:LOC_Os08g04780" /note="(Rice Genome Annotation Project) flowering locus D, putative, expressed" /note="mapping to R08-TIGRv4S1-000119R (Chr.8: short arm=2379408, long arm=2382908, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 519 a 569 c 661 g 515 t ORIGIN 1 ggagaaaccc caacctcgtc ggcggcgatg tcgtcgtcgt cgcggcggcc ggcgaggagg 61 gcggcgttga cggcgaggtc gtcgtacgac gagtagctgg tggacgccga gctggagtcc 121 tacctcggga acgccaggtc gcggcggatc agccggctgc gccgcctctc cgccgacgag 181 cggcagcggg agacggagac ggaggcgcta atagcgctct cgctgggctt ccccattgac 241 gagctgctcc ccgccgagcg gcccctcctg ccggcccccg tcgccgccgc ccccaacgac 301 tacatcgtcg tccgcaacca catcctcgcc ggcctcgccg ccgcgcgcca gctgctccga 361 ttcggcctcc gcgtgctcgt cctcgagggc cgcgcccgcc ccggcggccg cgtctacacc 421 actcatctcg gcggggacca ggccgccgtt gagctcggcg gcagcgtcat caccggcatc 481 cacaccaacc cgctcggcgt gctcgccagg cagctcggga ttccactcca caaggtgcga 541 gacagttgcc cgctctacca ccacgacggc cgcaccgtgg acatgaagct ggacaggagc 601 atggatctgg tgttcaacac gcttctagaa cacgccaccc ggctgcgaga gtatctcaag 661 aaggcagccg aggggatctc gctaggggaa ggtatagaga ggctgagacg cttttacaag 721 gtggcgaaaa gcgtcgagga gagggaggtt ctggactggc atttggctaa cctggaattc 781 tccaatgccg gctgcctatc ggagctctcg ctcgcgcact gggaccagga tgaccagtat 841 gagatggggg gagaccattg cttcctagcc ggagggaatg cgaggctggt acacgcattg 901 tgcgatggtg tgccggtgtt gtatgagaag acggtgaagc ggattgagca tggggaggat 961 ggggtgagca tcaccgtgga aggaggccag gttttcaagg ctgacatggc actctgcact 1021 gctccacttg gagtgctcaa gagcaggagc atcatttttg aaccggagtt gccagagagg 1081 aagcttgaag caatccagag gttggggttt gggttgttga acaaagtcgc catggtgttt 1141 ccccatgtat tttgggatga ggagattgac acatttgggt gtttgaataa ggagaggagc 1201 aagcgtggcg agttctttct cttctacagc taccacactg tctctggtgg tgcggtactt 1261 atcgcacttg ttgcgggaga agctgctttg gagtttgaaa aggttgatcc tgctgtagca 1321 cttcataggg tccttggtat tcttaaaggt atctatggcc ccaaaggtgt tacagtgcct 1381 gatcccattc aatcatgttg cacaagatgg ggtagtgatc ctctttgctc aggttcatac 1441 tctcacatca gagttgggtc ttctggcact gactatgata ttctcgctga gagcgtcaat 1501 gaccggttat tctttgctgg agaagcaaca aatcgtgcat accctgcaac aatgcatgga 1561 gctttattga gtggactaag ggaagcttcc aagattctcc atgcttcgga aagtagattg 1621 aattctgatt ataagaagta tgccctgcag aaaagcatca gacttataaa taatgtactg 1681 gacgaccttt tcatggagcc agatctagaa tgtggaagat tctcgttcgt gttctcctat 1741 attacacctg aggaggaaca ggctccggga ttggctagga ttacacttga gaagcctttg 1801 cttctgcctt ccaagaaacg caaagtaaag ggtaatcaga aggatcagga ccctgtggct 1861 gagaagatag accaagaggt gttttattta tacgccaccg tctcgcaaga gcaagcaact 1921 gaactattgg aatgcgacaa tgataaaagt aggatagcag ttctatgcaa agatcttggt 1981 gttaaactaa tgggttacga cagtacatac gatgtatgta gtcatctgat ttctagcatc 2041 tcgagagctc agaaagccag gaaaaggttg cagggaccga agagcttgaa aaccggactt 2101 tgatctgtac cgctacttta ttcttgtttg tagaaaagaa ccccatattt tctcttttgg 2161 tttgggccaa aaactggctc atagattgtt ctctagtgtg caaactttag acgtggggca 2221 ggaaaaccaa gatcctccct gccatttgta acatggcagt catc //