LOCUS       AK066546                1503 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J013070L16, full insert
            sequence.
ACCESSION   AK066546
VERSION     AK066546.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1503
                     /clone="J013070L16"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             146..1204
                     /db_xref="Osa1:LOC_Os04g51580"
                     /db_xref="RAP-DB:Os04g0605300"
                     /note="(RAP Annotation release2) Leucine-rich repeat,
                     typical subtype containing protein"
                     /note="(Rice Genome Annotation Project) leucine-rich
                     repeat-containing protein 40, putative, expressed"
                     /note="mapping to R04-TIGRv4S1-001027R (Chr.4: short
                     arm=30333956, long arm=30339312, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG90023.1"
                     /translation="MREMGEKRRRGHLNPAGFAGGLHDHEEKKNEEHKLDMSGMSMDA
                     LPHLTMSLGQVTILDLSNNNLESIPESIIARLLNVVVLDVRSNQLKSLPNSIGCLSKL
                     KVLNVSGNLLESLPNTIEECRALEELHANFNELTKLPDTLGFELHSLRKLSVNSNKLA
                     QLPSSTSHMTALRALDARLNCLRALPDGLENLANLEALNVSQNFQFLRELPYAVGLLA
                     SLRELDVSYNSIAALPDSMGCLTKLARFSAVGNPLVSPPMDVVEQGLDAMRAYLTARM
                     NGGDGKRKKKAWLPKLVKYSTFTARMTPGRTRVHENTEGLLMSDYRSLNGIASPRFLT
                     MLSPRRLFSPRRNSPKHC"
BASE COUNT          312 a          462 c          410 g          319 t
ORIGIN      
        1 gacaccatac atcccgcgcc ttcttcctcc tcagctttgc cgagacctcg ttgcctcaag
       61 ccgtgttgcg tgctgcatgc tctgaattga agaactctct tgggcctgac caggtatatc
      121 agaagtggag aagaagattg gaagcatgag ggaaatggga gagaagagga ggcgtggaca
      181 ccttaaccct gctggttttg caggagggtt gcatgatcat gaggagaaga agaacgagga
      241 gcataagcta gacatgagtg gcatgtccat ggatgccctc ccacacctca ccatgtctct
      301 tggtcaagtc accatcttgg atctctctaa caacaatctt gagagcatcc cggagtcaat
      361 aatcgctcgg ctgctgaacg tggtggtgct ggacgtgcgg tccaaccagc tgaaatcgct
      421 gcccaactcc atcggctgcc tctccaagct caaggtcctc aacgtctccg gcaacctgct
      481 cgagtccctc cccaacacca tcgaggagtg ccgtgcgctg gaggagctgc acgccaactt
      541 caacgagctg acgaagctgc cggacacgct ggggttcgag ctgcacagcc tccggaagct
      601 gtcggtgaac tccaacaagc tggcgcagct cccctcctcg acgtcgcaca tgacggcgct
      661 cagggcgctg gacgcccggc tcaactgcct ccgcgcgctc cccgacgggc tcgagaacct
      721 cgccaacctc gaggcgctca acgtcagcca gaacttccag ttcctccggg agctccccta
      781 cgccgtcggc ctcctcgcct cgctccggga gctcgacgtc agctacaact ccatcgccgc
      841 gctcccggac tccatgggct gcctcaccaa gctcgccagg ttcagcgccg tcggcaaccc
      901 gctggtgtcc ccgcccatgg acgtcgtgga gcagggcctg gacgccatgc gcgcctacct
      961 caccgcgagg atgaacggcg gcgacggcaa gaggaagaag aaggcgtggc tgcccaagct
     1021 ggtcaagtac agcaccttca cggcgaggat gacgcccggg cgcaccaggg tgcacgagaa
     1081 cacggagggc ctcctcatgt cggactaccg gtcgctcaac ggcatcgcct cgccgaggtt
     1141 cctcaccatg ctctcgccgc gccgcctctt ctcgccgcgg aggaattcgc ccaagcattg
     1201 ttgatatggc cgatccgatc cgcctctgcc tactctgtgt actggttgcc tgtttgcttc
     1261 aggggtgtac ttcagatgat gtcatgctct cgtacttaat taggatagat atgatgatgc
     1321 tgctgctgct agctgctacc gctgctgcaa ggtgtgtata tgttctcatg aagaggtttg
     1381 tagcttcgca tacagtatat agctctacaa tttttgtttg acgtaaaaaa tgctgtagta
     1441 caatctagag cattgatgta cataacaagg gtaattttct tccatgtctg tttgttaagc
     1501 acc
//