LOCUS AK066546 1503 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013070L16, full insert sequence. ACCESSION AK066546 VERSION AK066546.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1503) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1503 /clone="J013070L16" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 146..1204 /db_xref="Osa1:LOC_Os04g51580" /db_xref="RAP-DB:Os04g0605300" /note="(RAP Annotation release2) Leucine-rich repeat, typical subtype containing protein" /note="(Rice Genome Annotation Project) leucine-rich repeat-containing protein 40, putative, expressed" /note="mapping to R04-TIGRv4S1-001027R (Chr.4: short arm=30333956, long arm=30339312, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG90023.1" /translation="MREMGEKRRRGHLNPAGFAGGLHDHEEKKNEEHKLDMSGMSMDA LPHLTMSLGQVTILDLSNNNLESIPESIIARLLNVVVLDVRSNQLKSLPNSIGCLSKL KVLNVSGNLLESLPNTIEECRALEELHANFNELTKLPDTLGFELHSLRKLSVNSNKLA QLPSSTSHMTALRALDARLNCLRALPDGLENLANLEALNVSQNFQFLRELPYAVGLLA SLRELDVSYNSIAALPDSMGCLTKLARFSAVGNPLVSPPMDVVEQGLDAMRAYLTARM NGGDGKRKKKAWLPKLVKYSTFTARMTPGRTRVHENTEGLLMSDYRSLNGIASPRFLT MLSPRRLFSPRRNSPKHC" BASE COUNT 312 a 462 c 410 g 319 t ORIGIN 1 gacaccatac atcccgcgcc ttcttcctcc tcagctttgc cgagacctcg ttgcctcaag 61 ccgtgttgcg tgctgcatgc tctgaattga agaactctct tgggcctgac caggtatatc 121 agaagtggag aagaagattg gaagcatgag ggaaatggga gagaagagga ggcgtggaca 181 ccttaaccct gctggttttg caggagggtt gcatgatcat gaggagaaga agaacgagga 241 gcataagcta gacatgagtg gcatgtccat ggatgccctc ccacacctca ccatgtctct 301 tggtcaagtc accatcttgg atctctctaa caacaatctt gagagcatcc cggagtcaat 361 aatcgctcgg ctgctgaacg tggtggtgct ggacgtgcgg tccaaccagc tgaaatcgct 421 gcccaactcc atcggctgcc tctccaagct caaggtcctc aacgtctccg gcaacctgct 481 cgagtccctc cccaacacca tcgaggagtg ccgtgcgctg gaggagctgc acgccaactt 541 caacgagctg acgaagctgc cggacacgct ggggttcgag ctgcacagcc tccggaagct 601 gtcggtgaac tccaacaagc tggcgcagct cccctcctcg acgtcgcaca tgacggcgct 661 cagggcgctg gacgcccggc tcaactgcct ccgcgcgctc cccgacgggc tcgagaacct 721 cgccaacctc gaggcgctca acgtcagcca gaacttccag ttcctccggg agctccccta 781 cgccgtcggc ctcctcgcct cgctccggga gctcgacgtc agctacaact ccatcgccgc 841 gctcccggac tccatgggct gcctcaccaa gctcgccagg ttcagcgccg tcggcaaccc 901 gctggtgtcc ccgcccatgg acgtcgtgga gcagggcctg gacgccatgc gcgcctacct 961 caccgcgagg atgaacggcg gcgacggcaa gaggaagaag aaggcgtggc tgcccaagct 1021 ggtcaagtac agcaccttca cggcgaggat gacgcccggg cgcaccaggg tgcacgagaa 1081 cacggagggc ctcctcatgt cggactaccg gtcgctcaac ggcatcgcct cgccgaggtt 1141 cctcaccatg ctctcgccgc gccgcctctt ctcgccgcgg aggaattcgc ccaagcattg 1201 ttgatatggc cgatccgatc cgcctctgcc tactctgtgt actggttgcc tgtttgcttc 1261 aggggtgtac ttcagatgat gtcatgctct cgtacttaat taggatagat atgatgatgc 1321 tgctgctgct agctgctacc gctgctgcaa ggtgtgtata tgttctcatg aagaggtttg 1381 tagcttcgca tacagtatat agctctacaa tttttgtttg acgtaaaaaa tgctgtagta 1441 caatctagag cattgatgta cataacaagg gtaattttct tccatgtctg tttgttaagc 1501 acc //