LOCUS       AK066042                2971 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J013048L17, full insert
            sequence.
ACCESSION   AK066042
VERSION     AK066042.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2971)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..2971
                     /clone="J013048L17"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             92..1012
                     /db_xref="Osa1:LOC_Os09g35980"
                     /note="(Rice Genome Annotation Project) expressed protein"
                     /note="mapping to R09-TIGRv4S1-000690R (Chr.9: short
                     arm=20731108, long arm=20734244, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG89789.1"
                     /translation="MSSIAPSMRTRVRIPGYLSFMYHMFCCSHVVNSCFFSSIFFPDG
                     VAMEEKEDSLRASVTEQDTEALLLRDVLINGILAIGTLGHNVNSLCPESCIEQDEPII
                     MCDEKVEQEKCEEEKAEAKQDTPVTAPSEPASALEPAKMHSSSMKEDNFMCFVKEEIL
                     MHGMEVEDVPNIQERPLLMLEKVEKVRTTLADLFAAEAFSSSDAEDKCYPKIVIVAGA
                     STSKPTSCMEKMHHKKPTKPTSKPLKATRKLSRVWFSSSLLYLLSLVTLYFTSLEFIT
                     LCSMVSAPHLTHMFYHIATTGVSIMHLASL"
BASE COUNT          846 a          572 c          620 g          933 t
ORIGIN      
        1 gtactgtctg gctttctctt ctggtttcat attggttcta gagagatggc tctaaaggtg
       61 ttcaattggc tgaatcggaa gaagcattct aatgtcgagt attgcaccat caatgagaac
      121 aagggtaagg ataccaggat atctctcttt tatgtaccac atgttttgtt gttctcatgt
      181 tgtcaactct tgtttcttct cttctatttt ttttcctgat ggagtagcca tggaagagaa
      241 ggaagactct ctgcgtgcaa gtgtgactga gcaagacact gaggccctgc tgctccgtga
      301 tgtgcttatt aatggtatac ttgcaattgg cacgctgggc cacaatgtaa actcactctg
      361 tcctgagtcc tgtattgaac aagatgagcc catcatcatg tgtgatgaga aagtggaaca
      421 agagaagtgc gaagaagaaa aggctgaggc taaacaggac acaccagtta cagcaccaag
      481 tgaaccggca tctgctcttg agcctgccaa gatgcactca tcatcgatga aagaagacaa
      541 cttcatgtgc tttgtgaagg aggaaatcct aatgcatggc atggaagtgg aagatgttcc
      601 taacatccag gaacgaccac ttctgatgtt agagaaggtg gagaaagtga gaactacact
      661 tgccgatcta tttgctgcag aagcattctc atcaagtgat gcagaggata agtgttaccc
      721 gaaaatcgtc attgttgctg gggcatccac ttcaaagcct acgtcgtgca tggagaagat
      781 gcatcacaag aagccaacaa aaccaacgtc aaagccgctg aaggctacaa gaaaattaag
      841 tcgagtatgg ttttcttcgt ctctgcttta tttgttaagc cttgttacat tatattttac
      901 tagtctggaa tttattacac tttgttccat ggtcagtgcg ccacatctta cacatatgtt
      961 ttaccatata gctacaactg gagtaagcat tatgcatcta gccagtcttt agtggtaaat
     1021 gatcactgac ctggaatgca cctttttggt ttttgtcatc tgtaaaataa gtaggtcatg
     1081 aggaagatgt tggggaagaa gatccaccca gagcagctca atggacgtag caatgcagag
     1141 ggccctgtca ctgcataatg ctaggtttgt ggacaaaagt ttcctttctc tatctggcaa
     1201 tttattacct agagtttttt taaagctgtc tgttgaacta tacagggctc aaggcccttg
     1261 tgttttgcat acgattttgt acctttccaa attttcttga tttttacttg gattccattg
     1321 tttgtaataa aattaggtta atatctgagg tagtatttgc atagaatgga taccttctac
     1381 caaagttata tttgtttgtg ggtcctagag ctagcatgac ccacgaatca cattcaagaa
     1441 tatagtaatt cgtttaggct acatttcact aggaatagaa catatgaata ttctcaggtt
     1501 taataaggca gatgcaaaaa agaactgaat agcacaggaa agtaattttt ccatttcaag
     1561 cttctcacag tcaaaaacaa gtaatggttc aaaaattgaa tattctatca cctgttgcct
     1621 ccatttatgt ggaactcaca agagggtcta agtgctgctt gacactctga cctgtattta
     1681 aataaaatgt tatcacctat tgcctctgct tattattggg atctcaaaac acaatctatt
     1741 actgtgtatg ccttggcatt ttttaaaatc tgagctgccc ccttattctt cacattttct
     1801 cagaaaacca tataaacttt tagataaatg aagcttttat tgatctcaga caattacatc
     1861 aagttgatag aaccaaacta agaacacttc tggcctctga taatggaact gctgtttgtt
     1921 taagtagaaa gaatggtgtg tgtattttaa cggttggtga ttgggaattg ggatgcagtg
     1981 accatggaga ctgtgttctt cagaatattt ttaagaaata gtgttttcgg tggatcctat
     2041 catggaactg cctatggtgg aaagagcaat acgagttgaa acatataggg attaggaagc
     2101 atgggtttcg gactaaaatg cattcgttcc tgccatgatg caaagcttca ttcgaagcaa
     2161 aatgagcaca tgccatggta cagtggcgtg caacgagcac tgcaattgca cacgacgtgc
     2221 atgttctgaa aaaggccagt ggacactaga catgcagcta atcctctttt gatgaattct
     2281 atcatgaaac caatggattc gttgaaaatc tgaacaaatt gatggatttg gtcccagctg
     2341 tagaaaggtt ggcaaactct tctcgctcct gtattattgt aggctggagc tatgatggac
     2401 caaatcatca gaagcaaatt tcaccatata taagcatcta cttttatctt tttctctatt
     2461 ttaaaatgtg atcatagtga agttatatac attctatctg cttaacgctc cacattatcc
     2521 aaaaaaatgc atcacactcc atattgggaa cacgttggtg gttctgaacc aaagtcgatc
     2581 tcttgatgcc aatttttttt ttgagctggt tgagtagtcg aactgggaac aattactgct
     2641 tgaggctaca aaatttctgg ccgacaatac gtcttgatca ggaactgact aaagaaattc
     2701 cctttcacct tttgcgggat ttgttggatc catcctcacg cttcggattc cttgctcaag
     2761 agaaacatcc atgcatatcg tcgacagcgt tcgttcagtc ctcttccttt tgttgttggt
     2821 gctgttgtta ttattgttat tgttattgct gcctattcgc tcgccagtga tgaagaatag
     2881 tcctgcctat atttgcctgt agtacattgt aaagctacag ttgacgtgtc ttgtaagacc
     2941 cttattatta ttgtccatac cacgacgtct c
//