LOCUS AK066042 2971 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013048L17, full insert sequence. ACCESSION AK066042 VERSION AK066042.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2971) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2971 /clone="J013048L17" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 92..1012 /db_xref="Osa1:LOC_Os09g35980" /note="(Rice Genome Annotation Project) expressed protein" /note="mapping to R09-TIGRv4S1-000690R (Chr.9: short arm=20731108, long arm=20734244, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG89789.1" /translation="MSSIAPSMRTRVRIPGYLSFMYHMFCCSHVVNSCFFSSIFFPDG VAMEEKEDSLRASVTEQDTEALLLRDVLINGILAIGTLGHNVNSLCPESCIEQDEPII MCDEKVEQEKCEEEKAEAKQDTPVTAPSEPASALEPAKMHSSSMKEDNFMCFVKEEIL MHGMEVEDVPNIQERPLLMLEKVEKVRTTLADLFAAEAFSSSDAEDKCYPKIVIVAGA STSKPTSCMEKMHHKKPTKPTSKPLKATRKLSRVWFSSSLLYLLSLVTLYFTSLEFIT LCSMVSAPHLTHMFYHIATTGVSIMHLASL" BASE COUNT 846 a 572 c 620 g 933 t ORIGIN 1 gtactgtctg gctttctctt ctggtttcat attggttcta gagagatggc tctaaaggtg 61 ttcaattggc tgaatcggaa gaagcattct aatgtcgagt attgcaccat caatgagaac 121 aagggtaagg ataccaggat atctctcttt tatgtaccac atgttttgtt gttctcatgt 181 tgtcaactct tgtttcttct cttctatttt ttttcctgat ggagtagcca tggaagagaa 241 ggaagactct ctgcgtgcaa gtgtgactga gcaagacact gaggccctgc tgctccgtga 301 tgtgcttatt aatggtatac ttgcaattgg cacgctgggc cacaatgtaa actcactctg 361 tcctgagtcc tgtattgaac aagatgagcc catcatcatg tgtgatgaga aagtggaaca 421 agagaagtgc gaagaagaaa aggctgaggc taaacaggac acaccagtta cagcaccaag 481 tgaaccggca tctgctcttg agcctgccaa gatgcactca tcatcgatga aagaagacaa 541 cttcatgtgc tttgtgaagg aggaaatcct aatgcatggc atggaagtgg aagatgttcc 601 taacatccag gaacgaccac ttctgatgtt agagaaggtg gagaaagtga gaactacact 661 tgccgatcta tttgctgcag aagcattctc atcaagtgat gcagaggata agtgttaccc 721 gaaaatcgtc attgttgctg gggcatccac ttcaaagcct acgtcgtgca tggagaagat 781 gcatcacaag aagccaacaa aaccaacgtc aaagccgctg aaggctacaa gaaaattaag 841 tcgagtatgg ttttcttcgt ctctgcttta tttgttaagc cttgttacat tatattttac 901 tagtctggaa tttattacac tttgttccat ggtcagtgcg ccacatctta cacatatgtt 961 ttaccatata gctacaactg gagtaagcat tatgcatcta gccagtcttt agtggtaaat 1021 gatcactgac ctggaatgca cctttttggt ttttgtcatc tgtaaaataa gtaggtcatg 1081 aggaagatgt tggggaagaa gatccaccca gagcagctca atggacgtag caatgcagag 1141 ggccctgtca ctgcataatg ctaggtttgt ggacaaaagt ttcctttctc tatctggcaa 1201 tttattacct agagtttttt taaagctgtc tgttgaacta tacagggctc aaggcccttg 1261 tgttttgcat acgattttgt acctttccaa attttcttga tttttacttg gattccattg 1321 tttgtaataa aattaggtta atatctgagg tagtatttgc atagaatgga taccttctac 1381 caaagttata tttgtttgtg ggtcctagag ctagcatgac ccacgaatca cattcaagaa 1441 tatagtaatt cgtttaggct acatttcact aggaatagaa catatgaata ttctcaggtt 1501 taataaggca gatgcaaaaa agaactgaat agcacaggaa agtaattttt ccatttcaag 1561 cttctcacag tcaaaaacaa gtaatggttc aaaaattgaa tattctatca cctgttgcct 1621 ccatttatgt ggaactcaca agagggtcta agtgctgctt gacactctga cctgtattta 1681 aataaaatgt tatcacctat tgcctctgct tattattggg atctcaaaac acaatctatt 1741 actgtgtatg ccttggcatt ttttaaaatc tgagctgccc ccttattctt cacattttct 1801 cagaaaacca tataaacttt tagataaatg aagcttttat tgatctcaga caattacatc 1861 aagttgatag aaccaaacta agaacacttc tggcctctga taatggaact gctgtttgtt 1921 taagtagaaa gaatggtgtg tgtattttaa cggttggtga ttgggaattg ggatgcagtg 1981 accatggaga ctgtgttctt cagaatattt ttaagaaata gtgttttcgg tggatcctat 2041 catggaactg cctatggtgg aaagagcaat acgagttgaa acatataggg attaggaagc 2101 atgggtttcg gactaaaatg cattcgttcc tgccatgatg caaagcttca ttcgaagcaa 2161 aatgagcaca tgccatggta cagtggcgtg caacgagcac tgcaattgca cacgacgtgc 2221 atgttctgaa aaaggccagt ggacactaga catgcagcta atcctctttt gatgaattct 2281 atcatgaaac caatggattc gttgaaaatc tgaacaaatt gatggatttg gtcccagctg 2341 tagaaaggtt ggcaaactct tctcgctcct gtattattgt aggctggagc tatgatggac 2401 caaatcatca gaagcaaatt tcaccatata taagcatcta cttttatctt tttctctatt 2461 ttaaaatgtg atcatagtga agttatatac attctatctg cttaacgctc cacattatcc 2521 aaaaaaatgc atcacactcc atattgggaa cacgttggtg gttctgaacc aaagtcgatc 2581 tcttgatgcc aatttttttt ttgagctggt tgagtagtcg aactgggaac aattactgct 2641 tgaggctaca aaatttctgg ccgacaatac gtcttgatca ggaactgact aaagaaattc 2701 cctttcacct tttgcgggat ttgttggatc catcctcacg cttcggattc cttgctcaag 2761 agaaacatcc atgcatatcg tcgacagcgt tcgttcagtc ctcttccttt tgttgttggt 2821 gctgttgtta ttattgttat tgttattgct gcctattcgc tcgccagtga tgaagaatag 2881 tcctgcctat atttgcctgt agtacattgt aaagctacag ttgacgtgtc ttgtaagacc 2941 cttattatta ttgtccatac cacgacgtct c //