LOCUS AK065980 2148 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013049G01, full insert
sequence.
ACCESSION AK065980
VERSION AK065980.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2148)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2148
/clone="J013049G01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 145..1731
/db_xref="Osa1:LOC_Os07g47500"
/db_xref="RAP-DB:Os07g0671700"
/note="(RAP Annotation release2) Similar to Arginine
methyltransferase-like protein"
/note="(Rice Genome Annotation Project) histone-arginine
methyltransferase CARM1, putative, expressed"
/note="mapping to R07-TIGRv4S1-001096F (Chr.7: short
arm=28400640, long arm=28407860, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG89761.1"
/translation="MASPDLFPNVSFSHVSVPAAAGASTEVTGGATAVFGGDASTGAP
RLSLVWSGETQAKHTLEIDLSDAQIFKLGPTEWLCVSGESEAKDGVEEKSYSRAIKVV
LRTEAESKAFYLAFQQWKHRVISGKAGEPLENGLIIGSKSKFDTKIEASSAKMYFHYY
GQLLHQQNMLQDFVRTGTYYAAVMENRSDFEGRVVVDVGAGSGILSLFAAQAGARHVY
AVEASEMAEHAQRLISGNPSLGQRITVIKGKVEEVELPEKADILISEPMGTLLVNERM
LESYVIARDRFLVPGGKMFPTTGRIHMAPFSDEYLYVEMANKALFWQQHNFFGVDLTP
LHGSAFQGYFSQPVVDAFDPRLLVSPPTFHTLDFTTMKEEELYEIDIPLNFVASVGTR
VHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRCILSQPLYVMAGQEITGRLHLV
AHSAQSYTIYLTMSAKMWGEGAEQGGILQTSTAKLELKEPYYRLSQPQPYVMQQDQQQ
QQLPSLQPQSPLWDYHYGQD"
BASE COUNT 547 a 515 c 544 g 542 t
ORIGIN
1 gttactccac ccacgcgtac aaacagcgag ctcctccacc ccgcgacgcc gcgcgcctcc
61 gcccaaaacc ctagccaccc cgcgtcgccc gcctcggcgc gcccaaaacc ctagggcatc
121 ccggatccga agctcccggc cccaatggcg tcgccggacc tgttcccgaa cgtctccttc
181 tcccatgtct ccgtccccgc cgccgcgggc gcgtcgacgg aggtcaccgg cggcgccacg
241 gccgtgttcg gcggggacgc gtccaccggg gccccgcgcc tcagcctcgt ctggtccggg
301 gagacccagg cgaagcacac gctcgagatc gatctctctg acgcgcagat atttaagctg
361 gggccgacgg agtggctgtg cgtgagcggc gagtcggagg ctaaggacgg tgtggaggag
421 aagtcatatt caagagcaat taaggttgtt cttaggacag aagctgagag caaagccttc
481 tatttagctt ttcaacaatg gaaacaccga gtgattagtg gaaaagctgg tgaacctttg
541 gaaaatggat taataattgg ttctaaaagc aaatttgata caaaaattga ggcctcatca
601 gcaaagatgt atttccacta ctatggccag ttattacatc agcaaaatat gttgcaagac
661 tttgtcagga caggaacata ctatgctgct gtaatggaaa atcgatccga ttttgagggt
721 cgagttgtgg ttgatgttgg agctggtagt ggcattcttt cattatttgc tgcacaggct
781 ggtgccagac atgtatatgc agttgaggca tctgaaatgg ctgaacatgc tcagcgtctt
841 atttctggaa acccatctct tggacaaaga ataacggtca tcaaaggcaa agttgaggaa
901 gttgaacttc cagagaaagc tgacatactt atttcggagc ctatgggaac cctcttggtg
961 aatgaaagga tgctggagtc ctatgttata gctagagaca gattccttgt gccaggtggt
1021 aaaatgtttc caacaactgg aaggattcat atggctccat tttccgatga atacctctat
1081 gttgaaatgg caaacaaggc tctcttctgg cagcagcata acttttttgg tgttgatctt
1141 acacctttgc atggttcagc attccagggg tatttttcac agcctgtggt ggatgcattc
1201 gatccaagat tattggtttc tccgcctacg tttcatacgc ttgatttcac taccatgaag
1261 gaagaggagc tttacgagat tgacattccc ctaaattttg tggcctctgt tggcactagg
1321 gtgcatgggc tagcttgttg gtttgatgta ttgttcaatg ggagcactgt ccagaggtgg
1381 cttaccactg ctccaggctc ccctacgact cactggtatc aactacgatg catactttca
1441 cagccattat atgtcatggc aggacaagaa ataacaggac gacttcatct ggtagcccac
1501 agtgcacaaa gctacacgat atacttgacg atgtcagcta aaatgtgggg tgagggggca
1561 gaacaaggtg gcatcctgca gacatccaca gccaaacttg aactcaagga gccatactac
1621 aggctgtctc aaccacaacc atatgtgatg caacaagacc agcagcagca gcagttacca
1681 tctttgcagc cacagagtcc tctctgggac tatcactacg gacaagatta gttgtctggc
1741 ctcagctatt gaacattggc aagaatagca gggatctgag cagcagatgc aagatggtct
1801 tagccctagt ataacgattg aaccagacca agactcggcg gccttcacta gatagctcgt
1861 aagccggagt tgcttcaggc aaacaactcc aggcctgtac aacagtatgc tcctacctga
1921 tgttgctagg cgttagctgt cagtggctaa cattgcattc gttgtgtacg agaggttgtg
1981 cagctgtagc taattgtgct cgtgtctgca ccgttattta aagggggtca aatacaataa
2041 gtgtatctgt ttgcaggaaa agctcaacga caaaggcgtc taactagaac gattgttgtg
2101 tatgttctta tgtattattg ttttatttaa tttaaaaatg gttggtcg
//