LOCUS AK065788 2918 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013041H16, full insert
sequence.
ACCESSION AK065788
VERSION AK065788.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2918)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2918
/clone="J013041H16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2918
/db_xref="Osa1:LOC_Os01g02890"
/db_xref="RAP-DB:Os01g0118300"
/note="(RAP Annotation release2) Phosphatidyl serine
synthase family protein"
/note="(Rice Genome Annotation Project)
phosphatidylserine synthase 1, putative"
/note="mapping to R01-TIGRv4S1-000067F (Chr.1: short
arm=1043405, long arm=1049968, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 702 a 573 c 616 g 1027 t
ORIGIN
1 gattctgcta aaaatttcat cttggggggt atatttctca tattttagtt catgccgccg
61 ccactatgta ctaatcccac catagcagct catagtattc tccattgcaa tcctgtcgtc
121 tatttgtatt tgttttttgt ttgttagtat tagggtgctt ttgggtttgg ggtttctgcc
181 attgacggtt acctgaagag ctctcgatga agcggttctt ttttatttta ttttattttc
241 ggtgcctagt gaaatacagt ggtggttttg aatcattcct gggagttccc tggtggtttt
301 gactgatcaa aacgctacat tttttttatg tttatgttcc ctgttgttgt ttcttgccca
361 aatgcagatt cactcttgca tttgtttctc ttgatttcct ctgctgtttt gctctacaag
421 gacagaggac ttagtctgct tgttcgtcag ccttgcagga aaaaaaatgc agtaaaaaac
481 ctgtctattg cgattacttt gtgttcatct tggggcgctc ttattatgcg tgggaatcac
541 cagcagagtt catccgattt gatgcgcgca tctctaattc ccatcttttg cagcattgca
601 aaagctgctg ccttttagct tttgcgcttt cttaattagg aggggttgta cggcgcccct
661 gttggacctg attacttcca cagtaattgc atcatgacat tttattcctt tttaatcgtt
721 tccttttgct aatcttttta agtacaaatg gagtttcccc ccaaaaaaat attgcaaatg
781 gagttttttt ttttcccctt ctcctctcgc cttttgctgt ttcaggtttc gtatgttatc
841 ttcacatcaa tgcagccttt aattgcagca gaccaccctt ctttgctact agtatgggaa
901 aaaaaaatca gagccacacg aactgtgggt atttgctatg ggaacttcac aagttcgcca
961 gcaatacaac ttgaatgcgt cctgaagatc tagattccgc aggtcaaatc gtcgaatttc
1021 agagctagta gtactgtagg cttgcctggt gcaactgtgg gttatgcttc aatagccttt
1081 aactgtgggt taatgtgtag agtatatgtc aaatacagaa tttttacttg aagaagatgt
1141 gtttattttc agatgtgttg gaccatttca tgttgtccac ttgtaggtac tttcgtggcc
1201 taagtagtac attattcagt tgttagttat ttgtctcact gaatgcaagt gtatctttag
1261 taagagttgg actgcattgt acttgtttta atcttcttga aggccagtaa gaatttgtac
1321 tctaatacaa aattgtggaa attttacaga taataagctg ctaagaatta tcaccatgga
1381 ggtcaatggt catcacaaac caagaagaga atataatggc cgagagtgca atggtgtaca
1441 atcagtaaac aattttggcg atatcgatcc atggacagca tgggcataca aaccgcgcac
1501 agtttcattg ctactgatgg gaacatgctt tttaatttgg gcaagtggtg ctcttgatcc
1561 agaaagaagc ttctctgttg accgcgtttc atctgttaaa aggggtgtct ttgcaatgat
1621 tgctgttttt ttggcttatt catttcttca ggcaccttct actgtactta ttagaccaca
1681 tcctgccatt tggcggctgg tccacgggat ggcagttgtt taccttgttg ctctaacttt
1741 tttgcttttc cagacccgtg atgatgctag gcaatttatg aagtatcttc accctgatct
1801 tggtgttgaa ttacctgaaa gatcttatgg aaccgactgc cgcatatatg tacctgatca
1861 cccgaaaagc aggtttctct aggagatcct ttttgatgag tttgttattg cccatatcct
1921 tggatggtgg gggaaggcta taatgataag aaaccaacca cttttatggg tattatcaat
1981 tggctttgag ctaatggagc tcacctttcg ccatatgctg ccaaacttta atgagtgttg
2041 gtgggatagc atcgtactag acatattaat ctgcaattgg tttggtattt gggctggaat
2101 gaagactgtg agatactttg atgggaggac atatgaatgg gttggtttga gtcgtcaacc
2161 caatattatc agtaaggtaa aaaggacgct aggccagttc acaccagcac agtgggacaa
2221 agatgagtgg taccctctgc ttggcccttg gagattcatc caggtgctga gcctatgtat
2281 tgttttcatg attgttgaac ttaacacatt ctttctcaag ttctgccttt ggattcctcc
2341 ccgaaacccc ttgattgttt accgacttgt cctttggtgg ttaattgcga taccaaccat
2401 tcgcgagtac aatacatact tacaagacag gaaacctgtt aaaaaggtgg ggtctttctg
2461 ttggctttcc ctagctattt gcattttgga gcttctacta tgcatcaagt ttggacatgg
2521 tctctttccg aagtcgatgc cgtcatggtt gttcatagcc tggacgaccg tggcgtcgct
2581 tctgatgatg ttccttcttg tgtggacttg gaaaatttac cgaacaatga taaggaaaag
2641 gctatgattc ttctgttgct ttgctctcaa ttctttcctc ctccattcaa tattgtcgtg
2701 taaatattca ttcaaaaaaa tctgtacatg tggtagtagc cattaatttg gtggtctcga
2761 gaaggatcat cataaggaat tttatgtctt tgcctttgta ttccatgagc caaaatggca
2821 ttcccttttc cttcctgtga tgtaactctg acagccaaac tttagtgttc ctttggtcca
2881 atctaattcc tgggaaataa tgaaccaaga tttattct
//