LOCUS AK065743 2416 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013040G16, full insert
sequence.
ACCESSION AK065743
VERSION AK065743.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2416)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2416
/clone="J013040G16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2416
/db_xref="Osa1:LOC_Os02g02410"
/db_xref="RAP-DB:Os02g0115900"
/note="(RAP Annotation release2) Endosperm lumenal
binding protein"
/note="(Rice Genome Annotation Project) luminal-binding
protein 3 precursor, putative, expressed"
/note="mapping to R02-TIGRv4S1-000051R (Chr.2: short
arm=838742, long arm=842638, direction=reverse) for TIGR
Pseudomol ver4"
BASE COUNT 617 a 551 c 742 g 506 t
ORIGIN
1 gacttgaagg ttttcggatc gcaacccaaa ctcgcacaag ggagaagaga agagaagctt
61 cgagagagag gtggaggagg agacgagcgc gtggtggtgg tggtgttggc ggcgatggat
121 cgggttcgcg gatgcgcgtt cctgctcggc gtcctgctcg caggatccct gtttgcattt
181 tctgttgcga aggaggagac caagaagctc ggtaccgtga tcggtattga tcttggtaca
241 acctactcgt gtgtcggtgt gtacaagaat ggtcatgtcg agattatcgc caatgaccag
301 ggtaaccgta tcacaccctc atgggttgca ttcaccgata gcgagaggct catcggtgag
361 gctgccaaga accaggcagc tgtgaaccca gagaggacca tcttcgatgt caaacgtctc
421 attggaagaa agtttgaaga caaggaagtt cagagggaca tgaaacttgt cccctacaag
481 attgtgaaca aggacggtaa gccctacatt caggtcaaga tcaaggatgg agagaacaag
541 gtcttcagcc ctgaggaggt cagtgctatg atccttggaa agatgaagga gactgctgag
601 gcataccttg gcaagaagat caacgatgct gtcgtgactg ttcctgcgta cttcaatgac
661 gcgcagaggc aggcaaccaa ggatgccggt gtcattgctg gcctgaatgt tgctaggatc
721 atcaatgagc caactgctgc tgctattgcg tacggtttgg acaagaaggg tggtgagaag
781 aacatccttg tctttgacct tggtggtggg acattcgatg tcagtatctt gaccattgac
841 aacggtgtgt ttgaggtgtt ggccaccaat ggtgacactc atcttggagg tgaggacttt
901 gaccagagaa tcatggagta cttcatcaag ttgatcaaga agaagtacag caaggacatc
961 agcaaggaca accgtgctct tggaaagctg aggagggaag ctgagcgtgc caagagggcc
1021 ctcagcaacc agcaccaggt ccgtgttgag attgagtccc tctttgacgg gaccgatttc
1081 tcggagccgc tgacccgtgc cagatttgag gagttgaaca atgatctgtt ccgcaagacc
1141 atgggacctg tcaagaaggc tatggacgat gctggccttg agaagagcca gattcatgag
1201 attgttcttg tcggtggtag caccaggatt cccaaggttc agcagctcct cagagactac
1261 ttcgagggca aggagcccaa caagggtgtc aacccgatga ggctgttgcc tatggtgctg
1321 cggttcaggg aagcattctc agcggcgagg gcggtgacga aaccaaagat atccttctcc
1381 tggatgtggc accccttacc ctcggtatcg agactgtcgg tggagtcatg accaagttga
1441 tccccaggaa caccgtcatc cccaccaaga agtcccaggt gttcaccacc taccaggatc
1501 agcagacaac cgtctccatc caggtctttg agggtgagcg cagcatgacc aaggactgcc
1561 gtcttctcgg caagttcgac ctatctggca ttccagcagc accaaggggc accccccaga
1621 ttgaggtgac cttcgaggtg gacgccaacg gcatcctgaa cgtgaaggct gaggacaagg
1681 gcaccggcaa gtcggagaag atcacgatca cgaacgagaa ggggcgcctg agccaggagg
1741 agatcgaccg gatggtgcgc gaggcggagg agtttgcgga ggaggacaag aaggtgaagg
1801 agcggatcga cgcccgcaac cagctcgaga cctacgtgta caacatgaag aacaccgtcg
1861 gcgacaagga caagctggcg gacaagctgg agagcgagga gaaggagaag gtggaggagg
1921 ccctcaagga ggccctcgag tggctggacg agaaccagac cgccgagaag gaggagtacg
1981 aggagaagct caaggaggtc gaggccgtct gcaaccccat catctccgcc gtctaccaga
2041 ggaccggtgg cgccccgggt ggcggcgccg acggcgaggg cggcgtcgac gacgagcatg
2101 acgagctgta gatgatgatg atgatgatct gattcgattg attcaaagga gacagccaat
2161 ttttgtaaga gatggccggt tacttttagt ggggtgactt actactacct tgggttgggg
2221 tttaggggta gcaagagggg agagttttat ttgcagaaca ccagaaaaga gactaaatct
2281 ctcctcttgt tacttgtgtt gctctcttag tttgttactc tgtcgagtgt agaacagctc
2341 ttccttttgc tacttccttc tgatttccat gtgaactgtg aagaagaaga agaaacataa
2401 gtaaatttta attact
//