LOCUS AK065665 1859 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013041I04, full insert sequence. ACCESSION AK065665 VERSION AK065665.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1859) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1859 /clone="J013041I04" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 17..1570 /db_xref="Osa1:LOC_Os04g53700" /db_xref="RAP-DB:Os04g0629100" /note="(RAP Annotation release2) Zinc finger, MYND-type domain containing protein" /note="(Rice Genome Annotation Project) MYND finger family protein, expressed" /note="mapping to R04-TIGRv4S1-001123R (Chr.4: short arm=31783656, long arm=31788264, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG89611.1" /translation="MFISTPLPQVRDKVSRTKPPKPHGGGGERRRKKQPQEAAARAGG GMGGSSASPCDLDREFAPQIAQLLATPPLQPAQEYYNGLIQSRKHDGIRVNFSSKHGK GVCANKEFAEGDLILKDQILVGAQHSLNKIDCAVCSYCFRFIGSIEFQIGRRLYWQSV GSSSDCTNRRHCHESDLGSSASSSGATKENSSTLPEEVLGSLITGDMSLPFTDHFSLP QVVPCRGCEEERYCSQSCADSDWETYHSLLCTGSKTEPSQRSALQKFIEHANGSNDIF LVAAKAITFTLLRYKKLKTQPEFQNNTDESNFSLLMEAWKPLSMGYKKRWWDSVALPE DVDSCDEDTFRQQIRDLALTSLQLLKDAIFDSECAPLFSLDVYGHLIGMFELNNLGLV VPSPVEDYFIHIDDLPDDEKEEAEKVTRPFLDALGEDYAAPCEGTAFFPLQSCMNHSC CPNAKAYKRDEDTDGNAVIIALEPIKKDDEITISYIDEDVSYEERQAELADYGFICTC PRCQEEKPN" BASE COUNT 498 a 372 c 463 g 526 t ORIGIN 1 gatagctcga acacgtatgt tcatatccac acctctcccc caagtacgag acaaggtctc 61 gagaacaaaa ccccccaaac cccacggcgg cggcggcgag cggcggcgga agaagcagcc 121 gcaagaggca gcagctcgcg ctggcggcgg catgggtggg agcagcgcaa gcccgtgtga 181 cctggacagg gagttcgcgc cccaaatcgc ccagctcctc gccacccctc ctctccaacc 241 cgcgcaggaa tactacaatg ggctcataca gtccaggaaa catgatggta taagagtgaa 301 cttcagcagc aagcatggga aaggtgtttg tgcgaacaag gagtttgcag aaggggacct 361 tattctgaag gatcaaatat tggttggtgc tcagcacagt cttaacaaga ttgattgcgc 421 tgtgtgcagt tattgctttc gcttcattgg ttctatagag ttccagattg gacgaagatt 481 gtattggcaa agcgttggtt caagcagtga ctgcactaat aggaggcatt gccatgagag 541 tgatttggga tcgagtgcca gttcttctgg tgcaacaaag gaaaacagta gtactttgcc 601 agaagaggtc ttaggatcac ttattactgg tgacatgtca ctgcctttca cagaccattt 661 tagtttgcct caagttgttc cttgtcgtgg atgtgaggaa gaacgctact gcagccaatc 721 atgtgctgat tccgactggg aaacttatca ctctttgctg tgtactggat ctaagactga 781 accatcccag agatctgctc ttcagaaatt catagaacat gcaaatgggt ccaatgatat 841 ttttcttgtt gctgccaagg ctatcacttt cactctgctg aggtacaaga aactcaaaac 901 gcagcctgaa tttcaaaata acacagatga atcaaacttt tctttgctta tggaagcatg 961 gaaaccactt tcgatgggct acaaaaagag gtggtgggac tctgttgctt tgcctgagga 1021 tgttgattcc tgtgatgaag atacatttag gcagcaaatt agggatctag cacttacgtc 1081 attgcagctt ctcaaggatg ctatttttga ttctgagtgt gcacccttgt tctcacttga 1141 cgtgtatggc catttaattg gcatgtttga gctgaacaat cttggtttgg ttgttccgtc 1201 tccagtggaa gactatttca tacatattga tgatcttcca gatgatgaga aggaggaagc 1261 tgaaaaggtt acaaggccat ttctagatgc tttaggtgaa gactatgcag ctccttgtga 1321 ggggacggca ttctttcctt tgcaaagctg tatgaatcat tcatgttgtc caaatgctaa 1381 agcatataaa agggatgagg atactgatgg taatgcagtg ataattgctc tggagcctat 1441 caagaaggac gatgagatta ccatatccta catcgatgag gatgtctcct acgaggagag 1501 gcaggcggag cttgcagatt atggattcat ctgtacgtgc cctaggtgcc aagaagaaaa 1561 gcccaactga acaagatcca cagtttggag gttcctgaaa tttatttttt tggtgtggaa 1621 tatgcaattg aagttttgac gactccattt attttatttt ttttgtctag gatatgcaat 1681 tgagattttg acaactccaa aaatgttagg ataggatatg cggaaagaat gatatgatac 1741 gtacttattt gagtggatgc tggattttgc tgtgctaatg ttggatgctg caggaagttt 1801 ttattccttc tgttcagttg agatttttcc ttttgtgaaa ataacacatt tctgggacg //