LOCUS       AK065665                1859 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J013041I04, full insert
            sequence.
ACCESSION   AK065665
VERSION     AK065665.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1859)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1859
                     /clone="J013041I04"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             17..1570
                     /db_xref="Osa1:LOC_Os04g53700"
                     /db_xref="RAP-DB:Os04g0629100"
                     /note="(RAP Annotation release2) Zinc finger, MYND-type
                     domain containing protein"
                     /note="(Rice Genome Annotation Project) MYND finger
                     family protein, expressed"
                     /note="mapping to R04-TIGRv4S1-001123R (Chr.4: short
                     arm=31783656, long arm=31788264, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG89611.1"
                     /translation="MFISTPLPQVRDKVSRTKPPKPHGGGGERRRKKQPQEAAARAGG
                     GMGGSSASPCDLDREFAPQIAQLLATPPLQPAQEYYNGLIQSRKHDGIRVNFSSKHGK
                     GVCANKEFAEGDLILKDQILVGAQHSLNKIDCAVCSYCFRFIGSIEFQIGRRLYWQSV
                     GSSSDCTNRRHCHESDLGSSASSSGATKENSSTLPEEVLGSLITGDMSLPFTDHFSLP
                     QVVPCRGCEEERYCSQSCADSDWETYHSLLCTGSKTEPSQRSALQKFIEHANGSNDIF
                     LVAAKAITFTLLRYKKLKTQPEFQNNTDESNFSLLMEAWKPLSMGYKKRWWDSVALPE
                     DVDSCDEDTFRQQIRDLALTSLQLLKDAIFDSECAPLFSLDVYGHLIGMFELNNLGLV
                     VPSPVEDYFIHIDDLPDDEKEEAEKVTRPFLDALGEDYAAPCEGTAFFPLQSCMNHSC
                     CPNAKAYKRDEDTDGNAVIIALEPIKKDDEITISYIDEDVSYEERQAELADYGFICTC
                     PRCQEEKPN"
BASE COUNT          498 a          372 c          463 g          526 t
ORIGIN      
        1 gatagctcga acacgtatgt tcatatccac acctctcccc caagtacgag acaaggtctc
       61 gagaacaaaa ccccccaaac cccacggcgg cggcggcgag cggcggcgga agaagcagcc
      121 gcaagaggca gcagctcgcg ctggcggcgg catgggtggg agcagcgcaa gcccgtgtga
      181 cctggacagg gagttcgcgc cccaaatcgc ccagctcctc gccacccctc ctctccaacc
      241 cgcgcaggaa tactacaatg ggctcataca gtccaggaaa catgatggta taagagtgaa
      301 cttcagcagc aagcatggga aaggtgtttg tgcgaacaag gagtttgcag aaggggacct
      361 tattctgaag gatcaaatat tggttggtgc tcagcacagt cttaacaaga ttgattgcgc
      421 tgtgtgcagt tattgctttc gcttcattgg ttctatagag ttccagattg gacgaagatt
      481 gtattggcaa agcgttggtt caagcagtga ctgcactaat aggaggcatt gccatgagag
      541 tgatttggga tcgagtgcca gttcttctgg tgcaacaaag gaaaacagta gtactttgcc
      601 agaagaggtc ttaggatcac ttattactgg tgacatgtca ctgcctttca cagaccattt
      661 tagtttgcct caagttgttc cttgtcgtgg atgtgaggaa gaacgctact gcagccaatc
      721 atgtgctgat tccgactggg aaacttatca ctctttgctg tgtactggat ctaagactga
      781 accatcccag agatctgctc ttcagaaatt catagaacat gcaaatgggt ccaatgatat
      841 ttttcttgtt gctgccaagg ctatcacttt cactctgctg aggtacaaga aactcaaaac
      901 gcagcctgaa tttcaaaata acacagatga atcaaacttt tctttgctta tggaagcatg
      961 gaaaccactt tcgatgggct acaaaaagag gtggtgggac tctgttgctt tgcctgagga
     1021 tgttgattcc tgtgatgaag atacatttag gcagcaaatt agggatctag cacttacgtc
     1081 attgcagctt ctcaaggatg ctatttttga ttctgagtgt gcacccttgt tctcacttga
     1141 cgtgtatggc catttaattg gcatgtttga gctgaacaat cttggtttgg ttgttccgtc
     1201 tccagtggaa gactatttca tacatattga tgatcttcca gatgatgaga aggaggaagc
     1261 tgaaaaggtt acaaggccat ttctagatgc tttaggtgaa gactatgcag ctccttgtga
     1321 ggggacggca ttctttcctt tgcaaagctg tatgaatcat tcatgttgtc caaatgctaa
     1381 agcatataaa agggatgagg atactgatgg taatgcagtg ataattgctc tggagcctat
     1441 caagaaggac gatgagatta ccatatccta catcgatgag gatgtctcct acgaggagag
     1501 gcaggcggag cttgcagatt atggattcat ctgtacgtgc cctaggtgcc aagaagaaaa
     1561 gcccaactga acaagatcca cagtttggag gttcctgaaa tttatttttt tggtgtggaa
     1621 tatgcaattg aagttttgac gactccattt attttatttt ttttgtctag gatatgcaat
     1681 tgagattttg acaactccaa aaatgttagg ataggatatg cggaaagaat gatatgatac
     1741 gtacttattt gagtggatgc tggattttgc tgtgctaatg ttggatgctg caggaagttt
     1801 ttattccttc tgttcagttg agatttttcc ttttgtgaaa ataacacatt tctgggacg
//