LOCUS AK065294 2830 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013002N10, full insert
sequence.
ACCESSION AK065294
VERSION AK065294.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2830)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2830
/clone="J013002N10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2830
/db_xref="Osa1:LOC_Os08g06140"
/db_xref="RAP-DB:Os08g0157900"
/note="(RAP Annotation release2) Similar to NAM protein"
/note="(Rice Genome Annotation Project) ANAC014,
putative, expressed"
/note="mapping to R08-TIGRv4S1-000155R (Chr.8: short
arm=3382685, long arm=3387005, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 761 a 620 c 764 g 685 t
ORIGIN
1 gactccacca ccccacgctt ccttcgccgc taagtatatc cctcccggcg accgcgaatc
61 ggatcttgag agtgagagag aggttggggg aggtggatga gagggcggag atgacggtga
121 tggagctcaa gaagctgccg ctcgggttca ggttccaccc caccgacgag gagctcgtca
181 ggcactacct caaggggaag atcacggggc agatcaggag cgaggccgat gtcatccccg
241 agatcgatgt ctgcaagtgc gagccgtggg atctccctga taagtctctg atccgctccg
301 atgatccgga gtggttcttc ttcgcgccga aggataggaa gtatcccaat gggagcaggt
361 cgaacagggc gacggaggcc gggtactgga aggccaccgg gaaggacagg gtgatcaggt
421 ccaagggtga caagaagaag cagcaagtaa ttggcatgaa gaagacgctc gtgttccacc
481 gggggcgtgc gccgaagggt gagcggactg ggtggatcat gcatgagtac cgcaccaccg
541 agccggagtt tgagtccggt gagcagggag gttacgttct ctaccggctg ttccgaaagc
601 aagaggagaa aattgagcga cccagtccgg atgaagtgga tagaagtgga tactcaccca
661 ctccttctcg ttcaactcct gataacatgg aaccaattga agacggaaat acaccattaa
721 acagggaatc tccagaatct gctctgcatg aaagcccaat tgatttgcct gctctaactg
781 aggctcaagc tgcgccaatt acaaggtggc ttgcagacag aactgataac gcgacaacaa
841 atgaagtaaa catctctcac atgcctcatc atgggcttga tggaggagct aaggctagcc
901 cttcagctgg tgctttccct cagctgattg gttcacaaca gaatatccat gataataatg
961 aattagccac agtttctgca cccatgctac cacatgaaga cttcaataat ttccctctag
1021 gagccattgg taattttgat ggccatatga atcctcgaga tccagtggag gagttcttga
1081 atcaaaccat tgctgatcca gatgagcatt catcaacaac atcaaaggct cagtatgatt
1141 cggacactgg aatcatacca actgagtttg agaaccatgg ggtgatgcag ggtgaattca
1201 tggatgatct gagtgggttg gaaaatttag atttctggcc agatgaccga aatccccagt
1261 tgagtgcact gtatgaggac acaccattgc tgccttatga tagcaccgac caggatgtgc
1321 tctccatgga ctctggtgct gaatccttgc aagatctatt caacagcatg gacgattcaa
1381 acgcgaggaa taatgtatgg ggcaacgaac cattcctcca ggggactgga tttcccatgt
1441 cttggccgtt acagccgaac tccgcatttc caaaccgggg cactgcaaat aggaggctca
1501 tgctacagct atcagaatca ttatctcctg attttgatgt gagcatgact agagatgagt
1561 gtgaagatga ggaaccaggt attgttgtaa cttcgaagta tgtgaatgaa gctcctgagg
1621 agtcaactgc agaaaaggat atgccttctg atggagatga tgctgagcca acgggtatta
1681 ctatcctgag gcgacgccat gctccaactg caagttcgtt ttctgatgga gatgatgctg
1741 agtcaacggg tattaccatc ctaagacagc accaagctcc aaatgcaagc ttgctttctg
1801 atggagatga tgctgagtca acgggtatca ctatcctaag acgacgccaa gctccaactg
1861 ctagctcagc tagttcattt actcaacagg gtgctgcagt gcaaagggtg cggctacaat
1921 caaaccttga tgcagcaccg tgttctagcg ttgatggttc atcaagttgc atcataaatg
1981 aaggtgaaag tgaacgcacc atggagaaac ctgagattga agagaatgca ggaagtacct
2041 tggctgaagg tgggacttgc catgaggatg accagaagga gcatgatgct tcagcagcaa
2101 atgctaaatc tgttctgagg ctgcggaaga cagcagaggg aagcgacaag gagaacaagc
2161 aggaggaaga ggagggtgtt cttgcttcac atgtgagagc accagggaat aagaggggat
2221 tcccatcgta catcatttgg ctggttctct ctgtggctct ggtcctgctt atctcccttg
2281 ggatttatgg atgggtgtaa acagctgctc ccctgatggt cttcaagatg accatgctta
2341 ctggcacagg ctcccaacat tgacctgctg tgctgagtga cctgttgtac atattgcgtc
2401 ttacgccctt gtgtttagac ggcggttgct agacaccctg gagtgtttgt tccccttcca
2461 gcgtgctgcg gcagaagaaa aatccaaaaa caaaaaaaaa aagaggggcg aaaacgaaga
2521 aaaaagaaga ggtagtgaat gaggaaagtt gttgtagatg ttctgtgact taggtgcatg
2581 gtagtattcc ttcctgctgt tattgcagat gttagtagcc acatacccta gttgttcagc
2641 agttgtaagt caggttaggg atatggttac ttttgtctat gtaatgttct gtagcattat
2701 ctgaacctgc tttatcggat gcaatttcgt tttcctttca gtaaatctct gtgctgcaaa
2761 ctgtagttcc tgtgtaagtt ttgatgtgtg aaatgttaat acttctagta ctaatatact
2821 attgatgatg
//