LOCUS AK065078 2764 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013001K23, full insert sequence. ACCESSION AK065078 VERSION AK065078.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2764) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2764 /clone="J013001K23" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 617..2518 /db_xref="Osa1:LOC_Os09g30400" /db_xref="RAP-DB:Os09g0481700" /note="(RAP Annotation release2) SUSIBA2-like (WRKY transcription factor 80)" /note="(Rice Genome Annotation Project) OsWRKY80 - Superfamily of rice TFs having WRKY and zinc finger domains, expressed" /note="mapping to R09-TIGRv4S1-000546R (Chr.9: short arm=18495974, long arm=18500216, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG89349.1" /translation="MASSSDHGSLMEDWMPPPTPSPRTLMSSFLNEDFVSGSFSNIFS DHESNKPQDQFERNRELVDLSKEVPSQFARPAFQRDASLDHSLVSPTQRSNSHGGLAE RRAARAGFSVPKIDTSRGGSSTVIRSPVAIPPGLSPTTLLESPVFLYNAMAQPSPTTG TLPFLMASNAKSTIPSATKMDEDCTFGNDTFSFQPHVGSRRPNFSAAEKGPNACHQNQ SLSNIHQRESSLQSSFTAVKDITDEKNIKTKTSDSMFGDNHSSDEQDDETNQNGENSM PPPNHRSGVPLSHTNDPEVNVLENRGSQTCHNSASLWDNAKNDCLQDVQSEVIETRTA ACLPVSTNCDTSIMESQDAVDVSSTLSNEEDDRATHGTASIECNGDGDETDSKRRKLD ALTAATAAITTTSNIDMGAAASRGVREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGN PNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHEVPAARNSGHGSSGSGNA PSAPQSNGSQRRQEQGQASFSQFGGAAPFSSFVLPPRNQFGPSASNFPFGMVPPGMAI PMPSLGSLAPAKMAGHPSTMQGYQGLMIPEGEMKTEPMSQLGFPAVNQSSSSFQQMMN RPPSFGPQM" BASE COUNT 742 a 646 c 666 g 710 t ORIGIN 1 gagtcttctc ttcaccttct tctcatcctc ttcttctcct cctcggtcaa accgcctttt 61 cttctctccc ctatcctccg ctccgaggga gaaaaaaaaa caaagaaaga aagaaagaaa 121 gaaaaagagt actagtagca cccggagagt ggaggaaagg gagtaggcgg agccaaatct 181 cgtttctctt tagttgttgt tagtaccctt agtggaagaa tctctcccct tttcttgtgt 241 ttcttgggtt ttgaagtttt ttgttgttgg gaggtatgag gaatgaaggc ctaacctgag 301 gcaagatctt cgttttcctt catttgtggg ggtgtttgtt ggtggaaacg gatcaagaaa 361 agccggaatt tcggttctga aatcgtcggt tttgatatcg gtttctctct gttgattgga 421 gagagaggga gagagcaaac gcatgatctg tgtctgattc tgacgggcct tgtcgcggtc 481 cgtatcagtt catccatccc aacttgctgt tcgttttgtg tggtggtgtt tcgctttttt 541 gggaagagag gagaggaagc aatcattcgg cggcgacggc cccgcccact tgagttaaac 601 ttgattgctc tgtcgcatgg ccagcagtag cgaccatgga tccctcatgg aggactggat 661 gccaccaccc acacccagcc cgagaacact catgtcaagc ttcttgaatg aagattttgt 721 ctctggttca ttttccaata ttttcagtga tcatgagagc aacaaacccc aggatcagtt 781 tgagagaaac agagagcttg tggatttgag taaggaagtg ccttcccaat tcgcaagacc 841 cgcattccag agggatgctt ccctggatca tagcttggtc agtcctacac agagatcaaa 901 ctcgcatggt ggtttggcag agcgcagggc tgcgagggct ggtttcagtg tcccgaaaat 961 cgatacatcc cgtggtggtt catccacagt aattcgatcg cccgtggcaa ttccaccagg 1021 tcttagtcca acaacacttc tcgagtcacc ggttttcctt tacaacgcaa tggcacagcc 1081 ttctccaacc actggcacac tgccattttt gatggcttca aatgctaagt caacaatacc 1141 gtcagctacc aagatggacg aagattgcac atttggcaat gacactttct ccttccaacc 1201 gcatgtaggg tcgagacggc caaatttctc cgctgcagaa aagggtccca atgcttgtca 1261 ccaaaaccaa tcgctgtcga atatccatca gcgggaatcc agtcttcagt caagctttac 1321 tgcagtcaaa gatatcactg atgaaaaaaa cattaaaaca aagacatctg actccatgtt 1381 tggtgataac cactcttctg atgaacaaga tgatgagact aaccaaaatg gagaaaactc 1441 tatgccacct ccgaaccacc gttcaggtgt ccctctgtca cataccaatg atccagaagt 1501 gaatgtccta gagaaccgcg gttcacagac atgccataac tctgcatcct tgtgggacaa 1561 tgccaaaaat gattgccttc aagatgttca aagtgaagtt attgaaacaa gaacagctgc 1621 ttgtcttcca gtatcaacca attgtgatac atctatcatg gagtcccaag atgcagttga 1681 tgtgtcgtca acactatcta atgaggagga tgatagggca acgcatggca cggcttctat 1741 agagtgcaac ggggatggag atgagactga ttccaagaga aggaagctgg atgctttgac 1801 agctgcaact gctgctatta ccaccaccag taacattgac atgggagctg cggcatcgag 1861 aggtgtccgg gagcctcgtg ttgttgttca gacaacaagt gaggttgaca tccttgatga 1921 cggttaccgc tggcgcaagt atggacagaa ggttgttaaa ggaaatccaa acccaaggag 1981 ctattacaaa tgtacgcacc aagggtgttc ggtgcgcaag cacgtggaga gagcatcgca 2041 tgatctaaaa tccgtcatca cgacgtacga ggggaagcac aaccatgaag ttccagctgc 2101 cagaaatagt ggacatggga gctctggatc tggaaacgct ccatctgcac cgcaatctaa 2161 cggctctcag cgcaggcaag aacaagggca agccagcttc agccagtttg gtggcgcggc 2221 tcccttcagc tccttcgttc tcccaccaag aaaccaattt ggaccatcgg cgagcaattt 2281 cccctttggg atggtcccgc caggcatggc gattcccatg ccatctctag ggtctcttgc 2341 tccagcaaag atggctggtc atccatccac catgcagggc taccaggggc tcatgattcc 2401 ggaaggagag atgaagacag agcccatgtc gcagctcggc ttccccgcgg taaaccaatc 2461 ttcatcatcc ttccaacaga tgatgaacag gcctccatca tttggacctc agatgtaaat 2521 aataatatta aagaaagaaa agaaaatgat agatgtgctt cagcttctat acatggtagc 2581 aatgctacaa catagctttg ttgttctagc ttttacctgt tattttttct ttgggctttt 2641 attttttgga agcaaagaat gcagaagatg ttacccgttt tgtttatgtt gtaattggaa 2701 aaaaaaggtg gtggtagtgt tcaggacaaa aggcaaaatc attcaattgg aagtgctgat 2761 ggtg //