LOCUS AK064028 2158 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-125-B03, full insert
sequence.
ACCESSION AK064028
VERSION AK064028.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2158)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2158
/clone="001-125-B03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 103..1932
/db_xref="Osa1:LOC_Os09g32930"
/db_xref="RAP-DB:Os09g0506800"
/note="(RAP Annotation release2) Similar to Meiotic
asynaptic mutant 1"
/note="(Rice Genome Annotation Project) retrotransposon
protein, putative, SINE subclass, expressed"
/note="mapping to R09-TIGRv4S1-000614F (Chr.9: short
arm=19620228, long arm=19628268, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG88972.1"
/translation="MVMAQKTKEAEITEQDSLLLTRNLLRIAIYNISYIRGLFPEKYF
NDKSVPALEMKIKKLMPMDTESRRLIDWMEKGVYDALQKKYLKTLLFCICEKEEGPMI
EEYAFSFSYPNTSGDEVAMNLSRTGSKKNSATFKSNAAEVTPDQMRSSACKMIRTLVS
LMRTLDQMPEERTILMKLLYYDDVTPEDYEPPFFKCCADNEAINIWNKNPLKMEVGNV
NSKHLVLALKVKSVLDPCDDNNVNSEDDNMSLDNESDQDNDFSDTEVRPSEAERYIVA
PNDGTCKGQNGTISEDDTQDPVHEEELTAQVREWICSRDTESLEVSDVLVNFPDISME
MVEDIMERLLKDGLLSRAKKDSYSVNKIADPTTPHIKKEVIMQNVSPTEGTKNSNGDL
MYMKALYHALPMDYVSVGKLHGKLDGEASQNMVRKLIEKMVQDGYVKNSANRRLGKAV
IHSEVTNRKLLEIKKILEVDIAEQMAIDTNAEPGEPERKDHLSGHEMRDGSTMGCLQS
VGSDLTRTRELPEPQQNVSMQSGQEASTVDKDPSRTPTSVREASVCSLESGVLGQKVR
KSLAGAGGTQCSQDKRFRKASTVKEPILQYVKRQKSQVQVQVQ"
BASE COUNT 650 a 474 c 536 g 498 t
ORIGIN
1 aaagccccgc aaattctctc gctctctctc tctctctctc tcccactcct ctcccctctc
61 ccttctctca tctcgcgcgc ggcgcgccgc cgtagagacg aaatggtgat ggctcagaag
121 acgaaggagg cggagatcac ggagcaggat tcgctgcttc tgacaaggaa tttgctccgc
181 attgctatat acaacatcag ctacatcaga ggtctattcc ctgagaagta cttcaatgat
241 aagtcggttc cggcactaga gatgaagatt aagaagctaa tgcccatgga tactgagtcg
301 aggaggttga ttgattggat ggaaaaaggt gtctatgatg cactacagaa gaaatatctc
361 aagacccttc tcttctgcat ctgtgagaag gaggaaggcc caatgattga ggagtatgca
421 ttctcattta gctaccccaa cacgagcggt gatgaagttg caatgaactt gagccgcaca
481 gggagcaaga aaaacagtgc tacatttaaa tcaaatgcag cagaagtcac tcctgatcag
541 atgaggagct ctgcttgtaa gatgataaga acactggttt cacttatgag gaccttggac
601 caaatgccag aggagaggac cattctaatg aagctgctat actacgatga tgtcacacct
661 gaagattacg agccaccctt ttttaagtgt tgcgctgaca acgaggccat aaatatatgg
721 aacaagaacc ccttgaagat ggaagttgga aatgtcaata gcaagcatct cgtgttagct
781 ttgaaggtca agagtgtcct tgacccttgt gatgataaca atgtcaacag tgaagatgat
841 aatatgagct tggataatga atctgaccaa gataatgatt tttctgacac tgaggttcgc
901 ccatctgaag cagagcgtta cattgttgct ccaaatgatg ggacttgcaa aggtcaaaat
961 ggtacaatct cagaagatga tactcaagat cctgttcacg aggaagagct aacagctcaa
1021 gtaagagagt ggatatgctc aagagacact gaaagtcttg aggtttcaga tgtccttgtt
1081 aatttccccg acatatcaat ggaaatggtt gaagatatta tggagaggct acttaaagat
1141 ggtttactat ccagagcaaa aaaggatagt tattctgtta ataagattgc tgatcctaca
1201 acaccacaca taaagaaaga ggtcatcatg caaaatgtct cacctactga aggaactaaa
1261 aatagcaatg gtgatctgat gtatatgaag gcactgtacc atgcacttcc aatggattat
1321 gtgtcagtag gcaaacttca tggcaagcta gatggggagg ccagccagaa catggttcgt
1381 aagttgattg aaaaaatggt gcaagacgga tatgtcaaga attcagccaa ccgaagacta
1441 ggcaaagctg tcattcattc tgaagtcacc aacagaaagc tccttgagat aaaaaagatt
1501 ctggaagtcg atatagccga acaaatggcc attgatacca atgcagaacc tggtgagcct
1561 gagcgcaaag accacctgag tggccatgaa atgagagatg gatcgacgat gggttgcctc
1621 cagtccgtcg gatctgacct cacccgcacc cgggagcttc cggagccgca gcagaacgtg
1681 tccatgcaga gcgggcagga agcttccacg gtggataagg atccaagcag gactcctaca
1741 agcgtgcgcg aggcgtccgt ttgttccctg gagagtgggg ttctcgggca gaaggtcaga
1801 aagtctttgg ctggtgctgg cgggacgcag tgctcgcagg acaagcgatt caggaaggcc
1861 agcacggtga aggagccgat cctccagtac gtcaagcgcc agaagtccca agttcaagtt
1921 caagttcagt gagggttcgt gtcgcaagcg tcaggagcaa ctaacatcgt agttcaggtg
1981 cagaagacca caagtagata tatccatcct attcctagtt ccggtgctca agtttgtgca
2041 gatagtcaga gagcactcac gcacacgtag atatctgtcc atgccgctgt cccaaatggc
2101 aaatggagat agacgctact atgtgctaac acacactcaa attaagcatt caaaacgc
//