LOCUS AK063987 1589 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-124-D11, full insert
sequence.
ACCESSION AK063987
VERSION AK063987.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1589)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1589
/clone="001-124-D11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 212..1225
/db_xref="Osa1:LOC_Os08g01410"
/note="(Rice Genome Annotation Project) organic anion
transporter, putative, expressed"
/note="mapping to R08-TIGRv4S1-000017R (Chr.8: short
arm=262385, long arm=265553, direction=reverse) for TIGR
Pseudomol ver4"
/protein_id="BAG88948.1"
/translation="MEEAKMGDVATIRAVLAILQWWGFNVTVIIMNKWIFQKLEFKFP
LTVSCVHFICSSIGAYIAIKILKMKPLIEVAPEDRWRRIFPMSFVFCINIVLGNVSLR
YIPVSFMQTIKSFTPATTVILQWLVWRKYFEWRIWASLVPIVGGIMLTSITELSFNMF
GFCAAMVGCLATSTKTILAESLLHGYKFDSINTVYYMAPFATMILSVPAIVLEGSGVI
NWLYTYDSIVPALIIITTSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSW
MIFRNPISAMNAVGCAITLVGCTFYGYVRHLISQQSVNSSPRTPRSRMEMLPLVGDKQ
EKI"
BASE COUNT 387 a 374 c 348 g 480 t
ORIGIN
1 aactgaatta gttcgatcga tgcaggcagg caggccttct agttctacaa agatgcctct
61 aatggatcgt tttcctttcc tatcgatggc ttgattgata caaagccggt tttttcactc
121 ctcgggcgtg cgtttcttga caccggccgg attgatctat catccatcca tcgagtcgag
181 tcgagatcga tcttgatctc gatctcgatc gatggaggaa gccaagatgg gagacgttgc
241 caccatccga gccgttctgg cgatcctcca atggtggggc ttcaacgtca ccgtcatcat
301 catgaacaaa tggatcttcc agaaattgga gttcaagttc cctcttactg tctcgtgtgt
361 ccactttata tgctcttcga ttggagctta catcgcaatc aaaattctca agatgaaacc
421 actgattgaa gttgccccag aggatcggtg gagaagaata ttcccaatgt catttgtgtt
481 ctgcataaac attgtactgg gaaatgtcag cctgagatat attccagtct ccttcatgca
541 gaccataaaa tctttcaccc ctgcaacgac agttattctg cagtggttgg tctggaggaa
601 gtatttcgag tggcgcatat gggcttctct ggtaccaata gtgggaggaa tcatgttaac
661 atcaataact gagcttagtt tcaacatgtt tggtttttgt gctgctatgg ttggttgcct
721 ggcaacatct accaagacca tccttgcaga gtctctactc catggataca aatttgatag
781 cattaacact gtgtactaca tggcgccatt tgcaaccatg atactgtcag taccagcgat
841 tgtgctggaa gggagtggcg tcatcaattg gctctacacg tatgattcca tcgtccctgc
901 actgatcatc atcaccacct ccggagtact cgcattttgc ctcaacttct ccatcttcta
961 cgtcatccat tccacaacgg ctgtcacctt taacgtagcc ggcaacctga aagttgctgt
1021 ggctgtgttg gtgtcgtgga tgatcttccg gaacccgatc tccgcgatga acgctgtcgg
1081 gtgcgcaatc acgctcgtcg gctgcacctt ctatggctat gtgaggcatc tcatctcgca
1141 gcagagcgtt aattcgagcc cacgcacgcc gaggagccgg atggagatgc ttcccctcgt
1201 aggagacaag caagagaaga tttaattggc caccaaatta aaacaagttg atactcaaaa
1261 gaggagggaa ttgttggtgc atgatcaata ggaataaagg agcatcatct aacagctttc
1321 aggattaatc ctgaggcact tttgtcatag aaaattattc agagttttca gttgagttgt
1381 tcgtatagag ctaatagaac ttccttcttg tcatctgaac atgctggggt gctcctcagc
1441 tgtatctctc tctctctctc tctttctatt cttttcttcc tttttctcac aggattaaaa
1501 gatttttgtt tgctcgtaac tatgctacta ttgctacaca tttgatcaca cagcattgtt
1561 cagttgacta tagatattat tattatgtt
//